View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6666_low_2 (Length: 511)
Name: NF6666_low_2
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 27978009 - 27977530
Alignment:
| Q |
18 |
attgttaataattaatttgacttatgtatttggaatggtaaatagaatatataaaccnnnnnnngcgattgtggtccatttcaatttgctgctaatggag |
117 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
27978009 |
attgataataattaatttgatttatgtatttggaatggtaaatacaatatataaaccaaaaaaagcgattgtggtccatttcaatttgttgctaatggag |
27977910 |
T |
|
| Q |
118 |
tatatttggagttaaagaagtgtgttttggaagcaaatcaatg-tattaattgtgtaagacatgnnnnnnntcataaaagtaagctggttattatattca |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27977909 |
tatatt-ggagttaaagaagtgtgttttggaagcaaatcaatggtattaattgtgtaagacatgaaaaaaatcataaaagtaagctggttattatattca |
27977811 |
T |
|
| Q |
217 |
tgagaaaaaaacatttcaaaattgacttgaaatcaagagnnnnnnnnncatttactttctgaatatatgaacacattaaacacaaatacatggattttaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27977810 |
tgagaaaaaaacatttcaaaattgacttgaaatcaagagagaaaaaa-catttgctttctgaatatatgaacacattaaacacaaatacatggattttaa |
27977712 |
T |
|
| Q |
317 |
agatgcaagaattatagaagaaaattcaaccttgaaattagaaataccataataacattcatgttctatatattgtcacataatcacactacaatatcct |
416 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27977711 |
agatgcaagaattatagaagaaaatccaaccttgaaattagaaataccataataacattcatgttctatatattgtcacacaatcacactacaatatcct |
27977612 |
T |
|
| Q |
417 |
taacaattttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtgcttgctcattgatactat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27977611 |
taacaattttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtacttgctcattgatactat |
27977530 |
T |
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