View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6666_low_4 (Length: 389)
Name: NF6666_low_4
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 55229275 - 55228903
Alignment:
| Q |
1 |
taggttctaagccacaacctcctgttcttcacagtgttccaccaacaaaacttgtggcaaccaaaaacgatgagatcattcctacttctggcccaatttc |
100 |
Q |
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| T |
55229275 |
taggttctaagccacaacctcctgttcttcacagtgttccaccaacaaaacttgtggcaaccaaaaacgatgagatcattcctacttctggcccaatttc |
55229176 |
T |
|
| Q |
101 |
tgctcaattacacatcccagatgttatggtattgtccctctattttctctcatgctctttggacaaacttttttgttaatattttgacaaaagat-aaac |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
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| T |
55229175 |
tgctcaattacacattccagatgttatggtattgtccctctattttctctcatgctctttagacaaacttttttgttaatattttgac-aaagataaaac |
55229077 |
T |
|
| Q |
200 |
atatatttaaacactattgtttctttttagcagcctaaagatcaagttaaggatggtgctactgaggtcaaagtcgctgcttctcatgaaatcgttccag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55229076 |
atatatttaaacactattgtttctttttagcagcctaaagatcaagttaaggatggtgctactgaggtcaaagtcgctgcttctcatgaaatcgttccag |
55228977 |
T |
|
| Q |
300 |
taaccaattccaatgaaactcgtgaaggtggttccaaagattttagtttctctggcaatccccttcctctccac |
373 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55228976 |
taaccaattccaatgaaactcatgaaggtggttccaaagattttagtttctctggtaatccccttcctctccac |
55228903 |
T |
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