View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6666_low_5 (Length: 383)
Name: NF6666_low_5
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 49642980 - 49642613
Alignment:
| Q |
9 |
gagaagcaaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgag |
108 |
Q |
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| T |
49642980 |
gagaatcaaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgag |
49642881 |
T |
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| Q |
109 |
ttcaagcatggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctagg |
208 |
Q |
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| T |
49642880 |
ttcaagcatggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctagg |
49642781 |
T |
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| Q |
209 |
aatgtgtattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttg |
308 |
Q |
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| T |
49642780 |
aatgtgtattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttg |
49642681 |
T |
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| Q |
309 |
ttgatttaaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatg |
376 |
Q |
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| T |
49642680 |
ttgatttaaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatg |
49642613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 6623170 - 6623275
Alignment:
| Q |
59 |
ggatcttccgttaagcatgg--atattct-aacatacgacgatggaaaatgagttcaagcatggatgggtcggttcggtaccaactatgggaacggttat |
155 |
Q |
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| T |
6623170 |
ggatcttttgttaagcatggggatattcttaacatacggggattgaatatgagttcaagcatgtatgggtcgatt-tgtgtcaactatgggaactgttat |
6623268 |
T |
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| Q |
156 |
gggtttt |
162 |
Q |
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||||||| |
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| T |
6623269 |
gggtttt |
6623275 |
T |
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