View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6666_low_8 (Length: 248)
Name: NF6666_low_8
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 21746512 - 21746741
Alignment:
| Q |
18 |
atatagtattgaaaggaattataaaattaaattatgaagtcattcccatgttttggttgcttttggcatgcgcgaaaagcagtgtcacgtgcttcccata |
117 |
Q |
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| T |
21746512 |
atatagtattgaaaggaattataaaattaaattatgaagtcattcccatgttttggttgcttttggcatgcgcgaaaagcagtgtcacgtgcttcccata |
21746611 |
T |
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| Q |
118 |
tataaaaattcttacacagcacatagtgataggtatattaatttatttatggatttattgacaaaaggtaatattaatttatccttacatattatttgtt |
217 |
Q |
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| T |
21746612 |
aataaaaattcttacacagcacatagtgataggtatattaatttatttatggatttattgacaaaaggt-atattaatttatccttacatattatttgtt |
21746710 |
T |
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| Q |
218 |
gtttgtcattatactcaataattagtccaac |
248 |
Q |
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| T |
21746711 |
gtttgtcattatactcaataattagtccaac |
21746741 |
T |
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