View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6667_high_1 (Length: 583)
Name: NF6667_high_1
Description: NF6667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6667_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 12 - 566
Target Start/End: Original strand, 42535182 - 42535736
Alignment:
| Q |
12 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535182 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
42535281 |
T |
|
| Q |
112 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535282 |
tgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
42535381 |
T |
|
| Q |
212 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535382 |
tggatcaacatcagttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
42535481 |
T |
|
| Q |
312 |
aacaattcaattgtctacattggaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
411 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535482 |
aacaattcaattgtctacattagaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
42535581 |
T |
|
| Q |
412 |
cttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctc |
511 |
Q |
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| T |
42535582 |
cttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctc |
42535681 |
T |
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| Q |
512 |
aaaaaccaaacaaattttgtatggaactttcgtggagaactggttacatcattgg |
566 |
Q |
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| T |
42535682 |
aaaaaccaaacaaattttgtatggaactttcatggagaactggttacatcattgg |
42535736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 566
Target Start/End: Original strand, 42529460 - 42530017
Alignment:
| Q |
12 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
111 |
Q |
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||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
42529460 |
acagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgttaa |
42529559 |
T |
|
| Q |
112 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
211 |
Q |
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|| ||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
42529560 |
tgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttttcatttagcaatgttcaa |
42529659 |
T |
|
| Q |
212 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctca |
311 |
Q |
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| T |
42529660 |
cggatcaacatcagttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctca |
42529759 |
T |
|
| Q |
312 |
aacaattcaattgtctacattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattct |
408 |
Q |
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|| |||||| || |||||||||||||| |||||||||| | || ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
42529760 |
aagaattcagttatctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattct |
42529859 |
T |
|
| Q |
409 |
tgacttaccaagttttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttact |
508 |
Q |
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|||||||| ||||| |||| | | | | ||||||||||||||||||||||| ||| | | ||||||| |||| | ||||||| |||||||||||||| |
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| T |
42529860 |
tgacttacaaagttctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttact |
42529959 |
T |
|
| Q |
509 |
ctcaaaaaccaaacaaattttgtatggaactttcgtggagaactggttacatcattgg |
566 |
Q |
| |
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|||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
42529960 |
ctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattgg |
42530017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 411
Target Start/End: Original strand, 27824597 - 27824786
Alignment:
| Q |
228 |
ctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgtct |
327 |
Q |
| |
|
|||||||||||||||| || ||||| ||| |||||| ||||||||| | || |||||||||||||||||||||| |||||||||| ||||||| ||| |
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| T |
27824597 |
ctggcatcatgttattaatattcaatagagcaagtggtcatattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaatcatct |
27824696 |
T |
|
| Q |
328 |
a---cattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
411 |
Q |
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| ||| |||||| | |||| ||| | || | | | |||||||||||||||||||| |||||| |||| |||||||| |||||||| |
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| T |
27824697 |
actccatcggaataagaaggtggacttcatagagcaattcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 564
Target Start/End: Original strand, 27825625 - 27825750
Alignment:
| Q |
439 |
ggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaacaaattttgtatggaac |
538 |
Q |
| |
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|||||||||||| |||||||||| || ||| |||||||||||| | | | || ||||||||||||||| ||| ||| | |||| || ||| |||||| |
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| T |
27825625 |
ggtaagcagaaccgagttcatgactccttcagcatttatctttctgtacgaaaatcagttattccttactttcagaaatcgaacagtttctgtctggaac |
27825724 |
T |
|
| Q |
539 |
tttcgtggagaactggttacatcatt |
564 |
Q |
| |
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|||||||| ||||| || |||||||| |
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| T |
27825725 |
tttcgtggcgaacttgtcacatcatt |
27825750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 27822153 - 27822207
Alignment:
| Q |
90 |
ttgtgaaatttgatgatgttaatgccaaggtcctaacctactctccgcaagatag |
144 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||| |
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| T |
27822153 |
ttgtggaatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
33 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
87 |
Q |
| |
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|||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
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| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 27822302 - 27822347
Alignment:
| Q |
143 |
agtatattcaaggtttttgatcttaaaaactacacttttctatact |
188 |
Q |
| |
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||||||| |||||| || |||||||||||||||||||| ||||||| |
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|
| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatact |
27822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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