View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6667_low_1 (Length: 752)

Name: NF6667_low_1
Description: NF6667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6667_low_1
NF6667_low_1
[»] chr1 (12 HSPs)
chr1 (289-741)||(28909705-28910170)
chr1 (10-280)||(28909406-28909676)
chr1 (10-266)||(28921972-28922231)
chr1 (12-94)||(28914052-28914134)
chr1 (190-245)||(28914544-28914599)
chr1 (545-596)||(48830124-48830175)
chr1 (580-618)||(26779951-26779989)
chr1 (551-600)||(4078193-4078242)
chr1 (545-618)||(7218100-7218173)
chr1 (543-596)||(19462814-19462867)
chr1 (581-618)||(34290243-34290280)
chr1 (536-600)||(45205029-45205094)
[»] chr4 (2 HSPs)
chr4 (511-602)||(53155200-53155291)
chr4 (573-618)||(28423529-28423574)
[»] chr7 (6 HSPs)
chr7 (545-620)||(17989047-17989122)
chr7 (10-63)||(40288497-40288550)
chr7 (545-600)||(47004058-47004113)
chr7 (545-595)||(2727409-2727459)
chr7 (538-594)||(9527140-9527197)
chr7 (581-618)||(12110367-12110404)
[»] chr3 (3 HSPs)
chr3 (544-618)||(35394524-35394598)
chr3 (538-597)||(2321138-2321198)
chr3 (538-596)||(24235731-24235790)
[»] chr8 (2 HSPs)
chr8 (512-600)||(35298521-35298612)
chr8 (548-618)||(42370387-42370457)
[»] chr6 (3 HSPs)
chr6 (545-600)||(1402967-1403022)
chr6 (512-594)||(2514638-2514722)
chr6 (581-618)||(34430487-34430524)
[»] chr5 (3 HSPs)
chr5 (631-690)||(3290733-3290792)
chr5 (514-596)||(18704084-18704167)
chr5 (535-618)||(34205199-34205284)
[»] chr2 (4 HSPs)
chr2 (537-618)||(36863651-36863733)
chr2 (660-700)||(37419594-37419634)
chr2 (538-596)||(13736341-13736399)
chr2 (545-618)||(11513869-11513942)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 289 - 741
Target Start/End: Original strand, 28909705 - 28910170
Alignment:
Q  289 ggggcacaacatgatggtgaggttaaggtttctgatgtgtttctgcttccacaattgcatcacaattcacaatagaccttagtctcattagccgtaattg 388  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  28909705 ggggcacaacatgatggtgaggttaaggtttctaatgtgtttctgattccacaatggcatcacaattcacaatagaccgtagtctcattagccttaattg 28909804  T
Q  389 acctcataatatcaaggatcacagtatgactgtgatttaaaactttgtccaacatcattagttttttctaactattaaggttatgctcggataaatagtt 488  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  28909805 acctcacaatatcaaggatcacaatatgactgtgatttaaaactttgtccaacatcattagtttattctaactattaaggttatgcttggataaatagtt 28909904  T
Q  489 caatcaaacgcttataacatagatgcttatgtataagcaatttcagaataaaagataaataaagtcaaactattttaatatcaactatacattgttttca 588  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909905 caatcaaacgcttataacataaatgcttatgtataagcaatttcagaataaaagataaataaagtcaaactattttaatatcaactatacattgttttca 28910004  T
Q  589 taagctatcatgaagaagttatgaaaat-----------aacatataaacaagtcataagatctaacaaa---cagtttcacaactcacaagtgcttata 674  Q
    ||||||| ||||||||||||||||||||           ||| |||||||||||||||||||||||||||   |||| ||||||||||||||||||||||    
T  28910005 taagctagcatgaagaagttatgaaaataagatgaaaacaacttataaacaagtcataagatctaacaaacagcagtctcacaactcacaagtgcttata 28910104  T
Q  675 taagtagataaactcatacaagtcaaatctaaacatagcctaaaaagataagagagccatgatgatg 741  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  28910105 taagtagataaactcatacaaatc-aatctaaacatagcctaaaaagataagagagccatgatgatg 28910170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 28909406 - 28909676
Alignment:
Q  10 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909406 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 28909505  T
Q  110 tactctcctccatctataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacatggg 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909506 tactctcctccatttataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacatggg 28909605  T
Q  210 atagaaactgctcaccgagctctttcttggcaggatcctagaaaaaatttacactaatagtcaattttatt 280  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909606 atagcaactactcaccgagctctttcttggcaggatcctagaaaaaatttacactaatagtcaattttatt 28909676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 28921972 - 28922231
Alignment:
Q  10 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 109  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||| | |||||| ||| | |    
T  28921972 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa 28922071  T
Q  110 ta---ctctcctccatctataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacat 206  Q
    ||   || || ||||  ||||  | ||| |||| ||| |||||| ||||| |||||| |||||| ||||   || |  ||  ||||||| ||||||||||    
T  28922072 taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat 28922171  T
Q  207 gggatagaaactgctcaccgagctctttcttggcaggatcctagaaaaaatttacactaa 266  Q
    | ||||  ||||||||| | | ||||||||||||||||||||| |||||| ||| |||||    
T  28922172 gtgataacaactgctcagcaaactctttcttggcaggatcctacaaaaaaattatactaa 28922231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 28914052 - 28914134
Alignment:
Q  12 tcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttata 94  Q
    ||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||||||| | ||| ||  |||||||||||    
T  28914052 tcatcaaatttaccaagagcattctccaagaaatcagaagcaggacctgattcaaaataaccattttaaaaatctattttata 28914134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 28914544 - 28914599
Alignment:
Q  190 ggtgaatgtatcaacatgggatagaaactgctcaccgagctctttcttggcaggat 245  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  28914544 ggtgaatgtatcaacatgggataacaactgctcaccgaactctttcttggcaggat 28914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 596
Target Start/End: Complemental strand, 48830175 - 48830124
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctat 596  Q
    |||||||||||||||||||| |||| | ||||| | ||||||||||||||||    
T  48830175 aaataaagtcaaactattttcatataagctataaactgttttcataagctat 48830124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 618
Target Start/End: Complemental strand, 26779989 - 26779951
Alignment:
Q  580 ttgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  26779989 ttgttttcataagctatcttgaagaacttatgaaaataa 26779951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 4078242 - 4078193
Alignment:
Q  551 agtcaaactattttaatatcaactatacattgttttcataagctatcatg 600  Q
    |||||||||||||| |||| | |||||  |||||||||||||||||||||    
T  4078242 agtcaaactattttcatataatctataagttgttttcataagctatcatg 4078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 618
Target Start/End: Complemental strand, 7218173 - 7218100
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||| | |||| |||| | |||||  |||||||||||| ||||| || |||| ||||||||||||    
T  7218173 aaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataa 7218100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 19462867 - 19462814
Alignment:
Q  543 ataaataaagtcaaactattttaatatcaactatacattgttttcataagctat 596  Q
    ||||||||||||||||  |||| |||| |||| || ||||||||||||||||||    
T  19462867 ataaataaagtcaaacagttttcatataaactgtaaattgttttcataagctat 19462814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 34290243 - 34290280
Alignment:
Q  581 tgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  34290243 tgttttcataagctatcttgaagaacttatgaaaataa 34290280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 600
Target Start/End: Original strand, 45205029 - 45205094
Alignment:
Q  536 ataaaagataaa-taaagtcaaactattttaatatcaactatacattgttttcataagctatcatg 600  Q
    |||||||||||| ||||||||||||||||  |||| | ||| |  |||||||||||||||||||||    
T  45205029 ataaaagataaaataaagtcaaactatttccatataagctagaagttgttttcataagctatcatg 45205094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 602
Target Start/End: Original strand, 53155200 - 53155291
Alignment:
Q  511 atgcttatgtataagcaatttcagaataaaagataaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaa 602  Q
    |||||||||||||||| |||| | || ||||||||||||||||| ||||||||| ||||   ||||| | | ||||||||||||||||||||    
T  53155200 atgcttatgtataagctattttataacaaaagataaataaagtcgaactattttcatatatgctataaactattttcataagctatcatgaa 53155291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 618
Target Start/End: Original strand, 28423529 - 28423574
Alignment:
Q  573 ctatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||||| |||||||||||| |||  ||||||||||||    
T  28423529 ctatacattgttttcctaagctatcatgtagagtttatgaaaataa 28423574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 620
Target Start/End: Complemental strand, 17989122 - 17989047
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataaca 620  Q
    ||||||||||||||| |||| |||| |||||||  ||||||||||||||| || ||||||  ||||||||||||||    
T  17989122 aaataaagtcaaactgttttcatataaactataatttgttttcataagctctcctgaagagcttatgaaaataaca 17989047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 40288497 - 40288550
Alignment:
Q  10 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgatt 63  Q
    ||||||||||||| |||||||||||||||||| | ||||  |||||||||||||    
T  40288497 catcatcaaatttaccaagagcattctccaagtaatcaaaggcaggacctgatt 40288550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 600
Target Start/End: Original strand, 47004058 - 47004113
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatg 600  Q
    |||||||||||||||||||| |||| |||||||   ||||||||||||||| ||||    
T  47004058 aaataaagtcaaactatttttatatgaactataagctgttttcataagctaccatg 47004113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 2727459 - 2727409
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagcta 595  Q
    |||||||| |||||| |||| |||||||||||| |||||||| ||||||||    
T  2727459 aaataaaggcaaactcttttcatatcaactataaattgtttttataagcta 2727409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 594
Target Start/End: Complemental strand, 9527197 - 9527140
Alignment:
Q  538 aaaagata-aataaagtcaaactattttaatatcaactatacattgttttcataagct 594  Q
    |||||||| |||||||||||||| |||| |||| |||||||  |||||||||||||||    
T  9527197 aaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 12110367 - 12110404
Alignment:
Q  581 tgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  12110367 tgttttcataagctatcttgaagaacttatgaaaataa 12110404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 618
Target Start/End: Complemental strand, 35394598 - 35394524
Alignment:
Q  544 taaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    |||||||||| |||   |||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  35394598 taaataaagtgaaatggttttcatatcaaatatacactgttttcataagctatcttgaagaatttatgaaaataa 35394524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 597
Target Start/End: Original strand, 2321138 - 2321198
Alignment:
Q  538 aaaagataaataaagtcaaactattttaatatcaactatacattg-ttttcataagctatc 597  Q
    ||||||||||||||||||||||||||| |||| ||||| |  ||| |||||||||||||||    
T  2321138 aaaagataaataaagtcaaactattttcatataaactagatcttgtttttcataagctatc 2321198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 596
Target Start/End: Complemental strand, 24235790 - 24235731
Alignment:
Q  538 aaaagataa-ataaagtcaaactattttaatatcaactatacattgttttcataagctat 596  Q
    ||||||||| ||||||||||||||||| ||||| | |||||  |||||||||||||||||    
T  24235790 aaaagataatataaagtcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 512 - 600
Target Start/End: Complemental strand, 35298612 - 35298521
Alignment:
Q  512 tgcttatgtataagcaatttcag-aataaaagataaa-taaagtcaaactatttt-aatatcaactatacattgttttcataagctatcatg 600  Q
    ||||||||||||||| ||||||| || |||||||||| ||||| |||||  |||| ||||| |||||||  |||||||||||||||||||||    
T  35298612 tgcttatgtataagctatttcagtaacaaaagataaaataaagccaaacagttttcaatataaactataagttgttttcataagctatcatg 35298521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 618
Target Start/End: Complemental strand, 42370457 - 42370387
Alignment:
Q  548 taaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    |||||||||||||||||  ||| | ||||| | |||| |||||||||||||||||||  ||||| ||||||    
T  42370457 taaagtcaaactatttttttatgagctataaactgttctcataagctatcatgaagagtttatggaaataa 42370387  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 545 - 600
Target Start/End: Original strand, 1402967 - 1403022
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatg 600  Q
    ||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||    
T  1402967 aaataaagttaaactattttcatataagctataaattgttttcataagctatcatg 1403022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 594
Target Start/End: Original strand, 2514638 - 2514722
Alignment:
Q  512 tgcttatgtataagcaatttc-agaataaaagataaa-taaagtcaaactattttaatatcaactatacattgttttcataagct 594  Q
    ||||||||||||||| ||||| | ||||||||||||| ||||||||||||| ||| |||| | |||||  || ||||||||||||    
T  2514638 tgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcataagct 2514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 34430524 - 34430487
Alignment:
Q  581 tgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||||||| || |||||||||||||||||    
T  34430524 tgttttcataagctatcttggagaagttatgaaaataa 34430487  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 690
Target Start/End: Complemental strand, 3290792 - 3290733
Alignment:
Q  631 tcataagatctaacaaacagtttcacaactcacaagtgcttatataagtagataaactca 690  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||  ||||| ||||||||    
T  3290792 tcataagttctatcaaacagtttcacaattcacaagtgcttatactagtaggtaaactca 3290733  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 596
Target Start/End: Complemental strand, 18704167 - 18704084
Alignment:
Q  514 cttatgtataagcaatttc-agaataaaagataaataaagtcaaactattttaatatcaactatacattgttttcataagctat 596  Q
    ||||||||||||  ||||| | || ||||||||||||||||||| ||||||| |||| | |||||  |||||||||||||||||    
T  18704167 cttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcataagctat 18704084  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 618
Target Start/End: Original strand, 34205199 - 34205284
Alignment:
Q  535 aataaaagataaa-taaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaag-ttatgaaaataa 618  Q
    |||||| |||||| |||||||||| |||||| |||| | |||||  |||||||||||||||||| |||| ||| ||||| ||||||    
T  34205199 aataaaggataaagtaaagtcaaattatttttatataagctataagttgttttcataagctatcttgaaaaagcttatggaaataa 34205284  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 618
Target Start/End: Complemental strand, 36863733 - 36863651
Alignment:
Q  537 taaaagataaa-taaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||| ||||||||||| ||||| |||| |  |||| ||||||||||||||||||| || |||  ||||||||||||    
T  36863733 taaaagataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaataa 36863651  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 700
Target Start/End: Complemental strand, 37419634 - 37419594
Alignment:
Q  660 tcacaagtgcttatataagtagataaactcatacaagtcaa 700  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  37419634 tcacaagtgcttatataagtagataaactcaaataagtcaa 37419594  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 538 - 596
Target Start/End: Complemental strand, 13736399 - 13736341
Alignment:
Q  538 aaaagataaataaagtcaaactattttaatatcaactatacattgttttcataagctat 596  Q
    ||||||||||| ||||||||||||||| | |||| |||||   ||||||||||||||||    
T  13736399 aaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 13736341  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 618
Target Start/End: Original strand, 11513869 - 11513942
Alignment:
Q  545 aaataaagtcaaactattttaatatcaactatacattgttttcataagctatcatgaagaagttatgaaaataa 618  Q
    ||||||||||||| | |||| |||| | |||||  ||||||||||||||||||||| |||| || || ||||||    
T  11513869 aaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataa 11513942  T

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