View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6667_low_4 (Length: 378)
Name: NF6667_low_4
Description: NF6667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6667_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 37443990 - 37444331
Alignment:
| Q |
1 |
tatgaagcaccgtctacgcgagggaatatggaagagcttactaaatgagataagcgctttttagtgttcaaatacacacatattgatacattttctactt |
100 |
Q |
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| T |
37443990 |
tatgaagcaccgtctacgcgagggcatatggaagagcttactaaatgagataagcgctttttagtgttcaaatacacacatattgata------------ |
37444077 |
T |
|
| Q |
101 |
atttcagtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444078 |
------gtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctcctt |
37444171 |
T |
|
| Q |
201 |
ttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcgctgctaatattaaaaatgttcctcacactctcagaccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37444172 |
ttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcactgctaatattaaaaatgttcctcacactctcagaccaaa |
37444271 |
T |
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| Q |
301 |
atataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444272 |
atataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
37444331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 7492676 - 7492522
Alignment:
| Q |
78 |
acatattgatacattttctacttatttcagtaagctttccaaaaa-----tagcttataattttggttcaaaattggtttcactcactctaccctctctt |
172 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||||| || || |||||||| |
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| T |
7492676 |
acatattgataatttttctacttaattcaataagctttccaaaatactactagcctataatttaggttcaaaattggtttcattc----tatcctctctt |
7492581 |
T |
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| Q |
173 |
ttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgt |
231 |
Q |
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||||||||| |||||||||||||||||||||||||||| || | |||| |||||||||| |
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| T |
7492580 |
ttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatgt |
7492522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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