View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6667_low_5 (Length: 360)
Name: NF6667_low_5
Description: NF6667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6667_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 16173719 - 16173368
Alignment:
| Q |
1 |
atcatgtacgaaagtcaaaagtacataatattgagattatgaagatctaaatggattttagaatgggaagtttaggtaacaccaaaaagaatgacgatag |
100 |
Q |
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| T |
16173719 |
atcatgtacgaaagtcaaaagtacataatattgagattatgaagatctaaatggattttagaatgggaagtttaggtaacaccaaaaagaatgacgatag |
16173620 |
T |
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| Q |
101 |
aattgaagccaaaagtgtgcaagaacatcaaattgaaagatcacaaactttgaagcaaaacacaagtatatcaactagtttttcgaagaaacttggccgt |
200 |
Q |
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| T |
16173619 |
aattgaagccaaaagtgtgcaagaacatcaaattgaaagatcacaaactgtgaagcaaaacacaagtataaaaactagtttttcgaagaaacttggccgt |
16173520 |
T |
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| Q |
201 |
caaggaaaaacacaaaagtataaaataacgacta--nnnnnnncaaatggctggttcatttcttgatttaaattataaatttaatgtacttcgtcttcgg |
298 |
Q |
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| T |
16173519 |
caaggaaaaacacaaaagtataaaataacgactatttttttttcaaatggctggttcatttcttgatttgaattataaatttaatgtacttcgtcttcgg |
16173420 |
T |
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| Q |
299 |
tagcaggttcacttgactttctcttcttgcttgtattttttggacgatattc |
350 |
Q |
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| T |
16173419 |
tagcaggttcacttgattttctcttcttgcttgtattttttggacgatattc |
16173368 |
T |
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