View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6668_high_6 (Length: 328)
Name: NF6668_high_6
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 9904801 - 9904496
Alignment:
| Q |
1 |
atttgaagaattttgggccatgctttgatagaaacatttgtggttgtgagagatgaagataaatcaaatcgtttaggattagtggaaacaagaaactaat |
100 |
Q |
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| T |
9904801 |
atttgaagaattttgggccatgctttgatagaaacatttgtggttgtgagagatgaagataaatcaaatcgtttaggattagtggaaacaagaaactaat |
9904702 |
T |
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| Q |
101 |
gataatagggtacgagttatttgaattttggagttgaaagaacaaagaagaaatcttaataggtttaaggatttgattagttttgtggattgttgaaata |
200 |
Q |
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| T |
9904701 |
gataatagggtatgagttatttgaattttggagttgaaagagcaaagaagaaatcttaataggtttaaggatttggttaattttgtagattgtggaaatt |
9904602 |
T |
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| Q |
201 |
gaagagttgtggttgaggtgtgtaatatagaatagtctaattaagtagggaattatataaatattttacattgcatagttaacgttcatgtcataataat |
300 |
Q |
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| T |
9904601 |
gaagagttgtggttgag--gtgtaatataggatagtctaattaagtagggaattatataaatattttacattgcatagttaacgttcatgtcataataat |
9904504 |
T |
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| Q |
301 |
taattata |
308 |
Q |
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| T |
9904503 |
taattata |
9904496 |
T |
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