View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6668_low_10 (Length: 292)
Name: NF6668_low_10
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 11330039 - 11330272
Alignment:
| Q |
52 |
actctatcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11330039 |
actctatcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttg |
11330138 |
T |
|
| Q |
152 |
aattaccataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttggg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11330139 |
aattaccataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttggg |
11330235 |
T |
|
| Q |
252 |
atgatccctgtctcttcttcgatgcttcttctcactc |
288 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
11330236 |
atgatccctgtctcttcttcgattctccttctcactc |
11330272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 11488060 - 11488293
Alignment:
| Q |
52 |
actctatcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11488060 |
actctatcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttg |
11488159 |
T |
|
| Q |
152 |
aattaccataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttggg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11488160 |
aattaccataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttggg |
11488256 |
T |
|
| Q |
252 |
atgatccctgtctcttcttcgatgcttcttctcactc |
288 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
11488257 |
atgatccctgtctcttcttcgattctccttctcactc |
11488293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University