View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6668_low_14 (Length: 242)
Name: NF6668_low_14
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_14 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0200 (1 HSPs) |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 1884451 - 1884686
Alignment:
| Q |
7 |
acatcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884451 |
acatcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaag |
1884550 |
T |
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| Q |
107 |
atgtttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcatta |
206 |
Q |
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| T |
1884551 |
atgtttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcatta |
1884650 |
T |
|
| Q |
207 |
tgcaactaaatggctacaagggttggttagtgaaac |
242 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
1884651 |
tgcaactaaatggctacaagagttggttagtgaaac |
1884686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 1266554 - 1266390
Alignment:
| Q |
44 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
143 |
Q |
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||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
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| T |
1266554 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
1266455 |
T |
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| Q |
144 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
208 |
Q |
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| T |
1266454 |
tattattgccattaatgtaaagggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
1266390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 30729310 - 30729416
Alignment:
| Q |
42 |
taatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttaga |
141 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |||| ||||||| |||||| ||| | || ||| |||||||||||||||||||| |
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| T |
30729310 |
taatgatatgaaagatacaagtcccagtaggaatgggctagctcctactgattgaatgtttgataatgcgccgattcttaggattgatcactttgttaga |
30729409 |
T |
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| Q |
142 |
gtcatta |
148 |
Q |
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|| |||| |
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| T |
30729410 |
gttatta |
30729416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 37214749 - 37214575
Alignment:
| Q |
49 |
atgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcatta |
148 |
Q |
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|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37214749 |
atgaaagactcaagcccgagtaggaatcagctagttcctcctgattggtggtttgaagatgtttcaatccttaggattgatcactttgttagagtcatta |
37214650 |
T |
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| Q |
149 |
ctgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatgcaactaaatggctac |
223 |
Q |
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| T |
37214649 |
ctgctattaaggtaaaaggcatgagatttgaactgattggtgctggaataatgcattatgcaactaaatggctac |
37214575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 20405 - 20569
Alignment:
| Q |
44 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
143 |
Q |
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||||||||||||||| |||| |||| |||||||| ||||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||||||||| |
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| T |
20405 |
atgatatgaaagataaaagttcaagcaggaatcagctagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgttagagt |
20504 |
T |
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| Q |
144 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
208 |
Q |
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|||| ||| ||||| ||||| |||||||||||||| |||| || |||||||| |||||||||| |
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| T |
20505 |
tattattgccattaatgtaaatggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
20569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 45148 - 45312
Alignment:
| Q |
44 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
143 |
Q |
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||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
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| T |
45148 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
45247 |
T |
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| Q |
144 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
208 |
Q |
| |
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|||| ||| ||||| |||||||||||||||||||| |||| || |||||||| |||||||||| |
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| T |
45248 |
tattattgccattaatgtaaagggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
45312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 16140458 - 16140559
Alignment:
| Q |
47 |
atatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcat |
146 |
Q |
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|||||||||||||||| || || |||||| |||| |||| |||||||| ||||||||||| | || ||| |||||||||||||||||||||| || |
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| T |
16140458 |
atatgaaagatacaagacctagcaggaatgggctagctccttctgattggatgtttgaagatgcattgattcttgggattgatcactttgttagagttat |
16140557 |
T |
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| Q |
147 |
ta |
148 |
Q |
| |
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|| |
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|
| T |
16140558 |
ta |
16140559 |
T |
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