View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6668_low_17 (Length: 237)
Name: NF6668_low_17
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23134898 - 23135127
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgatgtttcgtgtctttgggcacttgaaggatgcatctt |
100 |
Q |
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| T |
23134898 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctt |
23134997 |
T |
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| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134998 |
cggacagtaatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
23135097 |
T |
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| Q |
201 |
taacggttttttggggatttatgatgatgt |
230 |
Q |
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| T |
23135098 |
taacggttttttggggatttatgatgatgt |
23135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11894982 - 11894753
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgatgtttcgtgtctttgggcacttgaaggatgcatctt |
100 |
Q |
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| T |
11894982 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatctt |
11894883 |
T |
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| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
200 |
Q |
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| T |
11894882 |
cggacagtaatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
11894783 |
T |
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| Q |
201 |
taacggttttttggggatttatgatgatgt |
230 |
Q |
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| T |
11894782 |
taacggttttttggggatttatgatgatgt |
11894753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 20282683 - 20282454
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgatgtttcgtgtctttgggcacttgaaggatgcatctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20282683 |
taaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggatgcatctc |
20282584 |
T |
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| Q |
101 |
tggacagtagtggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
200 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282583 |
tggacaataatggggcgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttg |
20282484 |
T |
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| Q |
201 |
taacggttttttggggatttatgatgatgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20282483 |
taacggttttttggggatttatgatgatgt |
20282454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14655999 - 14656230
Alignment:
| Q |
1 |
taaagggttaacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgatgtttcgtgtctttgggcacttgaaggatgcatctt |
100 |
Q |
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||||||||| || |||||||||||||| | || |||||||||| ||| |||||| |||||| |||| |||||||| || |||||| || ||| | || |
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| T |
14655999 |
taaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcctgcgacgttttgtgtctttaggaacttgatgggtgcgtgtt |
14656098 |
T |
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| Q |
101 |
tggacagtagtgggg------cgtgactggttatttggaaggggtaggccagttttgtttctagttgttagatgattaagggcattgaacctgttatttt |
194 |
Q |
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||| ||||||||||| |||| |||||| || ||| | || |||||| |||||||||| | |||||| |||||||||||||| ||||| ||| |
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| T |
14656099 |
tggtcagtagtggggtaagggcgtggctggttgttaggattgagtgggccagctttgtttctaatagttagactgttaagggcattgaatttgttaattt |
14656198 |
T |
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| Q |
195 |
ttgttgtaacggttttttggggatttatgatg |
226 |
Q |
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|| ||||||||||||||| |||||||||||| |
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| T |
14656199 |
tttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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