View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6668_low_2 (Length: 552)

Name: NF6668_low_2
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6668_low_2
NF6668_low_2
[»] chr7 (3 HSPs)
chr7 (13-534)||(7806272-7806802)
chr7 (40-92)||(25611217-25611272)
chr7 (13-74)||(40659440-40659500)
[»] chr3 (3 HSPs)
chr3 (13-75)||(17583222-17583282)
chr3 (13-74)||(49428590-49428649)
chr3 (14-93)||(35368313-35368390)
[»] chr5 (2 HSPs)
chr5 (13-74)||(27175183-27175242)
chr5 (13-74)||(42522714-42522773)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-91)||(36788-36864)
[»] scaffold1017 (1 HSPs)
scaffold1017 (13-74)||(2039-2098)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-74)||(11683-11742)
[»] chr1 (2 HSPs)
chr1 (13-74)||(11067088-11067147)
chr1 (13-92)||(4968695-4968775)
[»] chr8 (2 HSPs)
chr8 (30-98)||(7975937-7976008)
chr8 (13-91)||(15920056-15920134)
[»] chr6 (2 HSPs)
chr6 (38-97)||(15926223-15926286)
chr6 (38-74)||(4920802-4920838)
[»] chr4 (1 HSPs)
chr4 (40-72)||(32820055-32820087)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Complemental strand, 7806802 - 7806272
Alignment:
Q  13 aatataacaaatataagaaaataaatctta-----tcttttttaataacaccgaaaatataacatt---acaagaaaatttgtttaaagatatatctcga 104  Q
    |||||||||||||||| |||||||||||||     ||||||||||||||||| | |||||||||||   |||| ||||||| |||||| ||||| || ||    
T  7806802 aatataacaaatataaaaaaataaatcttacagtatcttttttaataacaccaacaatataacattgttacaacaaaatttatttaaaaatataactaga 7806703  T
Q  105 aagacnnnnnnn-ccaacccaaaatccgttattctctttgaatattgtattgataaaaacacaaaagcaatacagaacgacaaaggtgaatcagaaaatc 203  Q
    | |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7806702 atgacaaaaaaaaccaacccaaaatccgttattctctttgaatattgtattgataaaaacacaaaagcaatacagaacgacaaaggagaatcagaaaatc 7806603  T
Q  204 actccttccctcctcttcttccgcgtgacctctctccataactcaattcgtacatttttcttcttaacccaaaaccctcacaaataaattctccattttt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  7806602 actccttccctcctcttcttccgcgtgacctctctccataactcaattcctacatttttcttcttagcccaaaaccctcaccaataaattctccattttt 7806503  T
Q  304 taatccctagaagctttcatgttcaaatcttctataaagtccatcaatttagcttaaaaggaacaagaagtaagtgagatatcccttcctctctctttcc 403  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7806502 taatctctagaagctttcatgttcaaatcttctatcaagtccatcaatttagcttaaaaggaacaagaagtaagtgagaaatcccttcctctctctttcc 7806403  T
Q  404 atgggctggcacaaaattgcccccatttttactctaaaaattccatttttccattttggtagaaattgacgttttgcatgcagaaattagactaatatat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7806402 atgggctggcacaaaattgcccccatttttactctaaaaattccatttttccattttggtagaaattgacgttttgcatgcagaaattagactaataaat 7806303  T
Q  504 gatgtttaaaatttggatctggggctgaagg 534  Q
    ||||||||||||||||||| |||||||||||    
T  7806302 gatgtttaaaatttggatcaggggctgaagg 7806272  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 25611217 - 25611272
Alignment:
Q  40 ttatcttttttaataacaccgaaaatataa---cattacaagaaaatttgtttaaa 92  Q
    |||||||||||||||||||||| |||||||    |||||| |||||||||||||||    
T  25611217 ttatcttttttaataacaccgacaatataatattattacatgaaaatttgtttaaa 25611272  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 40659440 - 40659500
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    ||||||| | |||||| |||| || |||||||||||||||||||||| | ||||||||||||    
T  40659440 aatataaaatatataataaaa-aattcttatcttttttaataacaccaacaatataacatta 40659500  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 17583282 - 17583222
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattac 75  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||| | |||||||||||||    
T  17583282 aatataacaaatataataaaa--attcttatcttttttaataacaccaacaatataacattac 17583222  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 49428649 - 49428590
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    |||||||||||||||||||||  | |||||||||||||||||||| | | ||||||||||||    
T  49428649 aatataacaaatataagaaaa--attcttatcttttttaataacagcaacaatataacatta 49428590  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 35368390 - 35368313
Alignment:
Q  14 atataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattacaagaaaatttgtttaaag 93  Q
    ||||||||||||||  ||||  | |||||||||||||||||||| | | ||||||| |||| || |||||||||||||||    
T  35368390 atataacaaatatattaaaa--attcttatcttttttaataacatcaacaatataatattataaaaaaatttgtttaaag 35368313  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 27175242 - 27175183
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  27175242 aatataacaaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 27175183  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 42522714 - 42522773
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    |||||||||||||||| ||||  | |||||| ||||||||||||||| | ||||||||||||    
T  42522714 aatataacaaatataataaaa--attcttatattttttaataacaccaacaatataacatta 42522773  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 36864 - 36788
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattacaagaaaatttgtttaa 91  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||| | ||||||  |||| | || |||||||||||    
T  36864 aatataacaaatataataaaa--attcttatcttttttaataacaccaacaatatactattatatgataatttgtttaa 36788  T

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Target: scaffold1017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 2039 - 2098
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||  | ||||||||||||    
T  2039 aatataacaaatataataaaa--attcttatcttttttaataacacaaacaatataacatta 2098  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 11742 - 11683
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    ||||||| |||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  11742 aatataataaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 11683  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 11067088 - 11067147
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 74  Q
    ||||||| |||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  11067088 aatataaaaaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 11067147  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 4968695 - 4968775
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaaa 92  Q
    |||||||||||||||| ||||  | |||||||| | ||||||||||| | ||||||||   |||| |||||||||||||||||    
T  4968695 aatataacaaatataacaaaa--attcttatctatcttaataacaccaacaatataacattattataagaaaatttgtttaaa 4968775  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 7975937 - 7976008
Alignment:
Q  30 aaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaaagatata 98  Q
    |||| ||||||||| ||||||||||||||| | ||||| ||   |||| |||||||||||||||||| ||||    
T  7975937 aaaaaaaatcttatattttttaataacaccaacaatatgacattattataagaaaatttgtttaaaggtata 7976008  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 15920134 - 15920056
Alignment:
Q  13 aatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaa 91  Q
    |||||||||||||||| ||||  | |||||||||||| ||||||||| | ||||||||   |||| ||||||||||||||||    
T  15920134 aatataacaaatataataaaa--attcttatcttttt-aataacaccaacaatataacattattataagaaaatttgtttaa 15920056  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 15926223 - 15926286
Alignment:
Q  38 tcttatcttttttaataacaccgaaaatataacat---tacaag-aaaatttgtttaaagatat 97  Q
    |||||||||||||||||||||| | ||||||||||   || ||| |||||||||||||||||||    
T  15926223 tcttatcttttttaataacaccaataatataacattgctataagaaaaatttgtttaaagatat 15926286  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 4920838 - 4920802
Alignment:
Q  38 tcttatcttttttaataacaccgaaaatataacatta 74  Q
    |||||||||||||||||||||| | ||||||||||||    
T  4920838 tcttatcttttttaataacaccaacaatataacatta 4920802  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 32820055 - 32820087
Alignment:
Q  40 ttatcttttttaataacaccgaaaatataacat 72  Q
    |||||||||||||||||||| ||||||||||||    
T  32820055 ttatcttttttaataacaccaaaaatataacat 32820087  T

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