View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6668_low_5 (Length: 463)
Name: NF6668_low_5
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 30484927 - 30484490
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30484927 |
caaaggctcaaaagctatcagacaacttagttcacatcaaagctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30484828 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484827 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
30484728 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
30484727 |
aacatcatgtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttttctctacagacgg |
30484628 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||| ||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30484627 |
gtgaaactcttagggtaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcattaggaagagacgatgataaaga |
30484528 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484527 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
30484490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 30712008 - 30712445
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30712008 |
caaaggttcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30712107 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
30712108 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttttcgactgagaggatttacctctttcaaactaaag |
30712207 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712208 |
aacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30712307 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30712308 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcgctgggaagagacaatgataaaga |
30712407 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30712408 |
aaagattgtcgagtttcttctcacccatgcgaaggact |
30712445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 30337105 - 30337542
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30337105 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30337204 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30337205 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
30337304 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30337305 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagataatattgctgaacgtaagaacaagttttctctacagatgg |
30337404 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||| | |||| |||||| || ||| |||| | ||||||||| |
|
|
| T |
30337405 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30337504 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
30337505 |
aaagattgttgagtttcttctcacccaagcgaaggact |
30337542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 30061898 - 30061474
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30061898 |
caaaggttcaaaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30061799 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30061798 |
acaagacctcaaagatggtgtttatgtgctcgatgatatccttgatgagtactcgatcaagtcttgtcgactgagaggatttacctctttcaaaccaaag |
30061699 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061698 |
aacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30061599 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||| |||||||| |||||| | |||| |||||| || ||| |||| | ||||||||| |
|
|
| T |
30061598 |
gtggcactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30061499 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacc |
434 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
30061498 |
aaagattgttgagtttcttctcacc |
30061474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 30751172 - 30750748
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30751172 |
caaaggctcaaaagctatcagacaacttagttcgcatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30751073 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30751072 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgattaagtcttgtcgactgagaggatgtacctctttcaaaccaaag |
30750973 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750972 |
aacatcatgtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30750873 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||| | |||| |||||| || ||| |||| | ||||||||| |
|
|
| T |
30750872 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30750773 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacc |
434 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
30750772 |
aaagattgctgagtttcttctcacc |
30750748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 30675868 - 30676305
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30675868 |
caaaggttcaaaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30675967 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||| ||| ||||||| ||||| ||||||||||| |
|
|
| T |
30675968 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaag |
30676067 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676068 |
aacatcatgtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30676167 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||| | | ||||||||||| || ||| |||| | |||| |||| |
|
|
| T |
30676168 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttggacgagaagttgatcaaga |
30676267 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30676268 |
aaagattgtcgagtttcttctcacccatgcgaaggact |
30676305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 30437324 - 30436902
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||| ||||||| || ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||| | |||||| ||||| | |
|
|
| T |
30437324 |
caaaggctgaaaacctatcaaccaccttagttgacatcaaggctgttcttgaagatgctgaaaagagacaagtcaaagacaacttcattaaggtatggct |
30437225 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||| ||| ||| || ||||| || |
|
|
| T |
30437224 |
acaagacctcaaagatgctgtttatgtgctcgatgacatccttgatgagtgttcgatcaagtctagtcgactgagaaaattcacatctttaaa------- |
30437132 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
30437131 |
--------gtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
30437040 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||| |||||||||||||| |||| |||||| | ||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
30437039 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
30436940 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
30436939 |
aaagattgtccagtttcttcttacccttgcgaaggact |
30436902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 29873700 - 29873263
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||||||||||| || ||||| | |||||||||||||||||||||||||| ||||||||| ||| ||| | | |||||||| ||||| | |
|
|
| T |
29873700 |
caaaggctgaaaaactatcaaccaccttagatttgatcaaggctgttcttgaagatgctgaaaagaaacaagtcacagaccgctctattaaggtatggct |
29873601 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| ||||||| | |||||| |||||||| |
|
|
| T |
29873600 |
acaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctggtcaacttagaggatcaatctcttttaaaccaaat |
29873501 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| |||||||| |||||| || |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||| | || |
|
|
| T |
29873500 |
aacatcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctacgggagg |
29873401 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
|| | | ||| ||||| | || || |||||| |||| || | ||||||||||||| | ||||| |||||| ||| ||| |||| ||||||||||| |
|
|
| T |
29873400 |
gtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggacgagaagatgataaaga |
29873301 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| ||||| |
|
|
| T |
29873300 |
aaagattgttgagtttcttctcacccaagcgagggact |
29873263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 29854837 - 29854413
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||||||||||| || ||||| | ||||| |||||||||||||||||||| ||||||||| ||| ||| | | |||||||| ||||| | |
|
|
| T |
29854837 |
caaaggctgaaaaactatcaaccaccttagatttgatcaatgctgttcttgaagatgctgaaaagaaacaagtcacagaccactctattaaggtatggct |
29854738 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
29854737 |
acaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacctctttcaaaccaaag |
29854638 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||| ||||| | || |
|
|
| T |
29854637 |
aacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctacgggagg |
29854538 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
|| | | ||| ||||| | || || |||||| |||| || | ||||||||||||| | |||| |||||| || ||| |||| ||||||||||| |
|
|
| T |
29854537 |
gtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaaagtgtttggacgagaagatgataaaga |
29854438 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacc |
434 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
29854437 |
aaagattgttgagtttcttctcacc |
29854413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 30208012 - 30207762
Alignment:
| Q |
46 |
tcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatga |
145 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| ||| | | | |||| ||| ||||| ||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
30208012 |
tcaacgctgttcttgaagatgctgagcagaagcaagtcatcaatcgctctataaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatga |
30207913 |
T |
|
| Q |
146 |
tatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagattggtaacaggtta |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| | | | | |||||||||||||||||||||| ||| | | ||||||||| || || || |
|
|
| T |
30207912 |
tatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaaaccaaagaacatcattttttgtcgtgagattggcaaaagattg |
30207813 |
T |
|
| Q |
246 |
aaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30207812 |
aaagagattacaaggaggttagatgatattgctgaaagtaaaaacaagttt |
30207762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 30401603 - 30401321
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
||||||| ||||| ||||||| | |||| ||||||| |||||||||||| |||||||||||||| |||| ||||||| | ||||||| ||||| | |
|
|
| T |
30401603 |
caaaggccaaaaacctatcaacctccttaaatcacatcgaggctgttcttgtagatgctgagaagagacaagtcaaagacagctatattaaggtatggct |
30401504 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| | ||||||||| |||||| |
|
|
| T |
30401503 |
ccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaacccaaag |
30401404 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
292 |
Q |
| |
|
|||||| |||||||| | |||| || |||||||| |||||||||||||| || || |||||||||||||| | ||||||||| |
|
|
| T |
30401403 |
aacatcgtgtttcgccgtcagatcggcaacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaa |
30401321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 30241008 - 30241245
Alignment:
| Q |
45 |
atcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
144 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||| ||| | |||||||| ||||| | ||| | |||||||||| ||||||||||||||||| |
|
|
| T |
30241008 |
atcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatg |
30241107 |
T |
|
| Q |
145 |
atatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagattggtaacaggtt |
244 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
30241108 |
atatccttgatgagtgctcgatcaagtctagtcgactgagaggattaacctct---------------ctcaagtttcgccatgagatcggtaacaggtt |
30241192 |
T |
|
| Q |
245 |
aaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagtttt |
297 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || | ||| ||||||| |
|
|
| T |
30241193 |
ggaagagattaacgggaggttggatgatattgctgataggaggaagaagtttt |
30241245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 17417283 - 17417509
Alignment:
| Q |
45 |
atcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
144 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||| ||| | | ||| ||| ||||| | ||| | |||||||||| |||||||||||| |||| |
|
|
| T |
17417283 |
atcaaggctgttcttgaagatgctgagcataaacaagtcacagatcgctctaacaaggtatggcttcaacaactcaaagatgttgtttatgtgctagatg |
17417382 |
T |
|
| Q |
145 |
atatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagattggtaacaggtt |
244 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| |||| || ||||| | ||| |||||||||||||||||||| ||||||| |||||| || | ||||| |
|
|
| T |
17417383 |
atattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaaaccaaagaacatcatatttcgccgtgagatcggccaaaggtt |
17417482 |
T |
|
| Q |
245 |
aaaagagattacaaggaggttagatga |
271 |
Q |
| |
|
|||||||||||||||| || ||||| |
|
|
| T |
17417483 |
ggaagagattacaaggagatttgatga |
17417509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 30329430 - 30329700
Alignment:
| Q |
19 |
aaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacct |
118 |
Q |
| |
|
|||| ||||||| || ||||| || ||||||| |||||||||||||| |||| | || ||| || ||| | | |||||||| ||||| | ||| | | |
|
|
| T |
30329430 |
aaaagctatcaaccaccttagatcttatcaaggttgttcttgaagatgttgagcataagcaagtctcagaccgctctattaagatatggcttcaacaaat |
30329529 |
T |
|
| Q |
119 |
caaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaag |
218 |
Q |
| |
|
|||||||| | | |||||||| ||||||||||||||||||| || |||||||||| ||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
30329530 |
caaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattagaggctcatcctctttcaaaccaaagaacattgta |
30329629 |
T |
|
| Q |
219 |
tttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
292 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||||| || || |||||| | |||||||||| ||||||||| |
|
|
| T |
30329630 |
tttcgccatgagat---caataggttgaaagaaattaccagaagattagataagattgctgaaaataagaacaa |
30329700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 296
Target Start/End: Complemental strand, 30476866 - 30476615
Alignment:
| Q |
45 |
atcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
144 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||| | | |||||||| ||||| | ||| | |||||||||||||| |||||||| |||| |
|
|
| T |
30476866 |
atcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatg |
30476767 |
T |
|
| Q |
145 |
atatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagattggtaacaggtt |
244 |
Q |
| |
|
|||| |||||||| | || || || ||| || |||| | || | ||| |||||| | ||||||||| |||||||| ||| || || || ||||| |
|
|
| T |
30476766 |
atattcttgatgaatgttccattgaatctagtagacttaaagcctcgtcctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggtt |
30476667 |
T |
|
| Q |
245 |
aaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
||||| ||||||||||| || ||| | |||||||||||||| |||||||| |
|
|
| T |
30476666 |
gaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagttt |
30476615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 30520401 - 30520491
Alignment:
| Q |
206 |
aaagaacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
|||||| |||| |||||||||| | ||||| | ||||| ||||| ||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
30520401 |
aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt |
30520491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 30560741 - 30560831
Alignment:
| Q |
206 |
aaagaacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
|||||| |||| |||||||||| | ||||| | ||||| ||||| ||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
30560741 |
aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt |
30560831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 30401211 - 30401163
Alignment:
| Q |
399 |
gatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||| ||||| |
|
|
| T |
30401211 |
gatgataaagaaaagatttttgagtttcttctcacccatgcgagggact |
30401163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 30520589 - 30520629
Alignment:
| Q |
394 |
gagacgatgataaagaaaagattgtcgagtttcttctcacc |
434 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30520589 |
gagaagatgataaagagaagattgtcgagtttcttctcacc |
30520629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 30560929 - 30560969
Alignment:
| Q |
394 |
gagacgatgataaagaaaagattgtcgagtttcttctcacc |
434 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30560929 |
gagaagatgataaagagaagattgtcgagtttcttctcacc |
30560969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 30520240 - 30520275
Alignment:
| Q |
45 |
atcaaggctgttcttgaagatgctgagaagaaacaa |
80 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30520240 |
atcaaggccgttcttgaagatgctgagaagaaacaa |
30520275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 30560580 - 30560615
Alignment:
| Q |
45 |
atcaaggctgttcttgaagatgctgagaagaaacaa |
80 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30560580 |
atcaaggccgttcttgaagatgctgagaagaaacaa |
30560615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 30207664 - 30207611
Alignment:
| Q |
394 |
gagacgatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||| | |||| ||||| |
|
|
| T |
30207664 |
gagaagatgataaagagaagattatcgagtttcttctcacccaagcgagggact |
30207611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 20295162 - 20295599
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
20295162 |
caaaggctcgaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagcaatggtt |
20295261 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| | |
|
|
| T |
20295262 |
acaagacctcaaagatgctgtttatgtgctcggtgatatccttgatgagtactcgatcgagtctggtcgactgagaggatttaactctttcaaaccaatg |
20295361 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295362 |
aacatcgcgtttcgccatgagatcggtagcaggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
20295461 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20295462 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaaa |
20295561 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20295562 |
aaagattgtcgagtttcttctcacccatgcgaaggact |
20295599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 52353487 - 52353201
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||| ||| |||| || ||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||| ||| | | ||||||| ||||| | |
|
|
| T |
52353487 |
caaaagctgaaaacctgtcaaacacgttagatctcatcaaggcagttcttgaagatgctgagcagaaacaagtcacagaccgctctattaaagtatggct |
52353388 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
|| | ||||||||||||||||| || |||||||||||||||||||| | |||||| | ||| ||||||| | || || | || ||||||||||| |
|
|
| T |
52353387 |
tcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgttcgatcaaatctagtcgacttatgggtttatcgtcattcaaaccaaaa |
52353288 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
|| || |||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||| | |||||||||| |||||||||||| |
|
|
| T |
52353287 |
aatattgtgtttcgtcatgatattggaaacagattgaaagaaattacaaggagattcgatcaagttgctgaaaggaagaacaagttt |
52353201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 26708843 - 26708421
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||| ||||||| || ||||||| |||| | ||| |||||||||||||||||||||| |||| ||| ||| | ||||||| ||||| | |
|
|
| T |
26708843 |
caaaggctgaaaacctatcaaccaccttagttgacattagggccgttcttgaagatgctgagaagagacaagtcacagacaactttattaaggtatggct |
26708744 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
209 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||||| | ||||||| ||||| ||||||| | | ||| |||||||| || |
|
|
| T |
26708743 |
acaagacctcaaagatgttgtatatgtgctcgatgacatccttgatgaatgctcgatcaagtctagtcgactgaaaaaattcacctctttaaa------- |
26708651 |
T |
|
| Q |
210 |
aacatcaagtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
309 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26708650 |
--------gtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctacagacgg |
26708559 |
T |
|
| Q |
310 |
gtggaactcttagggaaatcccatatcaagtagttgaagggtgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaga |
409 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
26708558 |
gtggaactcttagggaaagcccatatcaagtagctgaagggcgccaaaccagctccacccctcttgaaacaaaagcgttgggaagagacgatgataaaga |
26708459 |
T |
|
| Q |
410 |
aaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26708458 |
aaagattgtcgagtttcttctcacccatgcgaaggact |
26708421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 49 - 296
Target Start/End: Original strand, 25292566 - 25292813
Alignment:
| Q |
49 |
aggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatat |
148 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||| | | |||||||| ||||| ||||| | |||||||||| ||| ||||||||||||||||| |
|
|
| T |
25292566 |
aggctgttcttgaagatgctgagcagaaacaagtcacagatcgctctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatat |
25292665 |
T |
|
| Q |
149 |
ccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagattggtaacaggttaaaa |
248 |
Q |
| |
|
||||||||||| | |||| | ||| ||||||| ||||| | |||||||||||||||||||||||| ||||| |||| | ||||| |||| ||| ||| |
|
|
| T |
25292666 |
ccttgatgagtgattgatcaaatctagtcgacttagaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggcaacaagttgaaa |
25292765 |
T |
|
| Q |
249 |
gagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
296 |
Q |
| |
|
|||||||||||||| || ||||||||||||| || ||||||||||||| |
|
|
| T |
25292766 |
gagattacaaggagattggatgatattgctgcaactaagaacaagttt |
25292813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 7052908 - 7052948
Alignment:
| Q |
390 |
ggaagagacgatgataaagaaaagattgtcgagtttcttct |
430 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
7052908 |
ggaagagacaaagataaagagaagattgtcgagtttcttct |
7052948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 7100932 - 7100785
Alignment:
| Q |
10 |
caaaggctaaaaaactatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactccctattaagctatggtt |
109 |
Q |
| |
|
|||||||| |||||||||||| || ||||| | || ||||||||||||||||| ||||| ||||| ||||| | ||| | | ||||| | ||||| | |
|
|
| T |
7100932 |
caaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagaccgctctattcaaatatggct |
7100833 |
T |
|
| Q |
110 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatga |
157 |
Q |
| |
|
|| | ||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
7100832 |
gcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatga |
7100785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 7580415 - 7580457
Alignment:
| Q |
117 |
ctcaaagatgctgtttatgtgctcgatgatatccttgatgagt |
159 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
7580415 |
ctcaaagatgcggtgtatgtgcttgatgatatccttgatgagt |
7580457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 7100563 - 7100510
Alignment:
| Q |
394 |
gagacgatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggact |
447 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||| | || ||||||| |
|
|
| T |
7100563 |
gagaagatgataaagagaagattgttgagtttcttctcacccaagcaaaggact |
7100510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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