View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6668_low_7 (Length: 352)
Name: NF6668_low_7
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 36606228 - 36606574
Alignment:
| Q |
1 |
gagtgatccagagttaacctgggacttactttctcattacaagtaatggtattttgaaaagttggtgtaaacggagaggattcaccagaaatattttcat |
100 |
Q |
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| T |
36606228 |
gagtgatccagagttaacctgggacttactttctcattacgagtaatggtattctgaaaagttggtgtaaactgagaggattcaccagaaatattttcat |
36606327 |
T |
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| Q |
101 |
caggaccatcactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaagtgtttgc |
200 |
Q |
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| T |
36606328 |
caggaccaccactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaagtgtttgc |
36606427 |
T |
|
| Q |
201 |
gaagtcaaaaagttcaaatccttgaatggagactgaagatgaaacagaattgttgctggttgcttgcattcctttggtactactttcaaaagccttcaaa |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36606428 |
aaagtcaaaaagttcaaatccttgaatagagactgaagatgaaacaga---gttgctggttgcttgcattcctttggtactactttcaaaagccttcaaa |
36606524 |
T |
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| Q |
301 |
ggctctctagaaacatgtggcagatga---ttaggtaactgatgatgtcc |
347 |
Q |
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|||||| |||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
36606525 |
ggctctttagaaacatgtggcagatgaccgttaggcaaccgatgatgtcc |
36606574 |
T |
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