View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6668_low_9 (Length: 310)
Name: NF6668_low_9
Description: NF6668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6668_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 25030787 - 25030490
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtgtgttaaactaatgatgattaagacggggttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25030787 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtgtgttaaactaatgatgattaagacggggttt |
25030688 |
T |
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| Q |
120 |
catttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttagatagttagtgtctaataagctcactaaattatagaatcttgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25030687 |
catttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttagatagttagtgtctaataagctcactaagttatagaatcttgt |
25030588 |
T |
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| Q |
220 |
actaatttcaata-----------------cttttgaaattttttctcaaaccccaagctcacaagcttcctttttcccttcctctcctcatcctttg |
300 |
Q |
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| T |
25030587 |
actaatttcaataccttttcaatgtggttccttttgagaatttttctcaaaccccaagctcacaagcttcctttttcccttcctctcctcatcctttg |
25030490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 20507529 - 20507597
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtg |
88 |
Q |
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| T |
20507529 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgactcagctgtgtcttcataaggtg |
20507597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 20507634 - 20507764
Alignment:
| Q |
92 |
taaactaatgatgattaagacggggtttcatttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttag--------atagtt |
183 |
Q |
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|||| |||||||| ||||||| ||||||| | |||| | ||||| ||||||||||||||| |||| ||||||||| |||||| ||| ||||| |
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| T |
20507634 |
taaattaatgatggttaagactgggtttcgtctgcatgattagaagtgtttcatgatataggtttcttagcttttatgttagatagttagtgatgtagtt |
20507733 |
T |
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| Q |
184 |
agtgtctaataagctcactaaattatagaat |
214 |
Q |
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| T |
20507734 |
ggtgtctaaaaagctcactaaattatagaat |
20507764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 24489694 - 24489771
Alignment:
| Q |
155 |
ttgttagcttttctgttagttagatagttagtgtctaataagctcactaaattatagaatcttgtactaatttcaata |
232 |
Q |
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|||||||||||||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
24489694 |
ttgttagcttttctgttagtgatgcaaatattgtctaataagctcactaaattatagaattttgtactaattttaata |
24489771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 25895514 - 25895469
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttga |
65 |
Q |
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| T |
25895514 |
taactgatataccaaggggctctgtcacctgccaacttaaatttga |
25895469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26038755 - 26038816
Alignment:
| Q |
26 |
atataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggt |
87 |
Q |
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| T |
26038755 |
atataccaaggggctctgtcacttgccaacttaactttgatgcagatgggtctccttaaggt |
26038816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30078995 - 30079056
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctcca |
81 |
Q |
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| T |
30078995 |
taactgacataccaaagggctctgttacatgtgaacttaaatttgacccagctctgtctcca |
30079056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 17773217 - 17773285
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtg |
88 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
17773217 |
taaccgatataccaaggggctctgtcacatgccaacttaaatttgattcaactgtgtctccttaaggtg |
17773285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 36162872 - 36162940
Alignment:
| Q |
20 |
taactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtg |
88 |
Q |
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||||||| ||||||||||||||| ||| || |||||| ||||||| ||||||| ||||| ||||||| |
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| T |
36162872 |
taactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtg |
36162940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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