View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6669_high_1 (Length: 449)
Name: NF6669_high_1
Description: NF6669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6669_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 24156476 - 24156056
Alignment:
| Q |
14 |
ttctgccatagaagtaaactcttcagcttgttaaggtttccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaact |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156476 |
ttctgccatagaagtaaactcttcagcttgttaaggtttccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaact |
24156377 |
T |
|
| Q |
114 |
cactgcaatttccaatctcttgaggaattgatcctgacaatagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaagaaggaat |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156376 |
cactgcaatttccaatctcttgaggaattgagcctgacaatagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaagaaggaat |
24156277 |
T |
|
| Q |
214 |
gcttcctgaaatacttgtttctgcaaggcctaataagatcaagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatttccacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156276 |
gcttcctgaaatacttgtttctgcaaggcctaataagatcaagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatttccacca |
24156177 |
T |
|
| Q |
314 |
gctctaaacacttgaagcttgttcaaaaaaccaatactctttggaatttcaccactcaaatgattatcatagagtgtaaagttcacaagacttgatagat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24156176 |
gctctaaacacttgaagcttgttcaaaaaaccaatactctttggaatttcaccactcaaatgattatcatagagtgtaaagttcacaagacttgatagat |
24156077 |
T |
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| Q |
414 |
ttccaatgttggatggaatgt |
434 |
Q |
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| T |
24156076 |
ttccaatgttggatggaatgt |
24156056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 53 - 432
Target Start/End: Complemental strand, 42215016 - 42214637
Alignment:
| Q |
53 |
ccaatttgagctggaattgaacctgagagagagttctgatacaaataaaggtgctgcaactcactgcaatttccaatctcttgaggaattgatcctgaca |
152 |
Q |
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|||||||||| |||||||||||| || | ||||||||||||||||| || | |||||||||||||||||| || ||||||| || || || ||||||| |
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| T |
42215016 |
ccaatttgaggtggaattgaaccagaaattgagttctgatacaaatacagattctgcaactcactgcaattccctatctcttctggtatagagcctgaca |
42214917 |
T |
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| Q |
153 |
atagagttgtgtaaatagctatggttttgattcttttcagcatttggattgaagaaggaatgcttcctgaaatacttgtttctgcaaggcctaataagat |
252 |
Q |
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| ||||||||||||| |||||||| | | | |||| ||||| |||||||||||||| || || ||||| | ||||||||||| ||||| | || |
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| T |
42214916 |
actgagttgtgtaaatggctatggtctgtaatttttttagcatccctattgaagaaggaatactaccggaaatgccggtttctgcaagacctaacatgac |
42214817 |
T |
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| Q |
253 |
caagtttgtgcagtttccaatctccaaagggatctcacccttgagatttttatttccaccagctctaaacacttgaagcttgttcaaaaaaccaatactc |
352 |
Q |
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|||||| |||||| |||| |||||| | || | ||||||||||| |||||||| || |||||||| || ||||||||||| | || || ||||||||| |
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| T |
42214816 |
caagttggtgcagcttccgatctccgatggcagctcacccttgaagtttttattgcctccagctctgaatacttgaagcttacttaataagccaatactc |
42214717 |
T |
|
| Q |
353 |
tttggaatttcaccactcaaatgattatcatagagtgtaaagttcacaagacttgatagatttccaatgttggatggaat |
432 |
Q |
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|| |||||||| || || | | ||| ||||||||||| |||||||||||||||| || |||||| |||||| ||||||| |
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| T |
42214716 |
ttcggaatttcgccgctgagtttattgtcatagagtgtcaagttcacaagacttggtaaatttcctatgttgaatggaat |
42214637 |
T |
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