View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6669_low_2 (Length: 233)

Name: NF6669_low_2
Description: NF6669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6669_low_2
NF6669_low_2
[»] chr7 (39 HSPs)
chr7 (1-227)||(11054316-11054542)
chr7 (1-220)||(19486185-19486403)
chr7 (97-227)||(37784671-37784802)
chr7 (1-227)||(13256297-13256522)
chr7 (1-227)||(48274087-48274312)
chr7 (2-227)||(17467607-17467830)
chr7 (2-227)||(17585384-17585607)
chr7 (1-227)||(3288981-3289205)
chr7 (1-73)||(13698861-13698933)
chr7 (94-219)||(111955-112081)
chr7 (94-219)||(26070944-26071070)
chr7 (94-219)||(26094731-26094857)
chr7 (94-222)||(2028359-2028488)
chr7 (107-219)||(3894477-3894589)
chr7 (107-227)||(25123890-25124010)
chr7 (107-227)||(42056992-42057112)
chr7 (92-203)||(370704-370815)
chr7 (107-227)||(2190878-2190998)
chr7 (92-203)||(13757987-13758098)
chr7 (92-203)||(14251426-14251537)
chr7 (2-227)||(37380485-37380708)
chr7 (1-73)||(33001920-33001990)
chr7 (94-227)||(3049019-3049154)
chr7 (1-76)||(10063124-10063199)
chr7 (92-203)||(18980548-18980659)
chr7 (4-199)||(40554739-40554932)
chr7 (92-201)||(15927186-15927296)
chr7 (106-218)||(10063204-10063316)
chr7 (107-227)||(15525268-15525388)
chr7 (107-227)||(21734746-21734866)
chr7 (18-73)||(8756385-8756440)
chr7 (107-227)||(4280729-4280849)
chr7 (1-72)||(29004831-29004900)
chr7 (4-55)||(8249470-8249520)
chr7 (92-199)||(28720332-28720439)
chr7 (4-76)||(13898230-13898301)
chr7 (92-191)||(21734167-21734270)
chr7 (1-67)||(48744297-48744363)
chr7 (122-222)||(13866472-13866573)
[»] chr1 (19 HSPs)
chr1 (1-227)||(51476596-51476822)
chr1 (4-227)||(52983831-52984053)
chr1 (4-220)||(21473404-21473618)
chr1 (4-220)||(18824232-18824446)
chr1 (4-227)||(13527936-13528157)
chr1 (1-201)||(7320817-7321014)
chr1 (1-199)||(51324137-51324334)
chr1 (4-227)||(18270929-18271151)
chr1 (4-227)||(18275583-18275805)
chr1 (94-219)||(27330432-27330558)
chr1 (2-227)||(20058088-20058312)
chr1 (1-199)||(21239267-21239464)
chr1 (94-219)||(35054221-35054347)
chr1 (107-227)||(20825453-20825573)
chr1 (1-73)||(20030863-20030934)
chr1 (92-203)||(17148185-17148296)
chr1 (1-73)||(7791779-7791850)
chr1 (20-73)||(21660130-21660183)
chr1 (92-199)||(39060977-39061084)
[»] chr8 (28 HSPs)
chr8 (4-227)||(22583881-22584102)
chr8 (4-227)||(23889410-23889630)
chr8 (1-220)||(3273499-3273719)
chr8 (5-220)||(34302161-34302376)
chr8 (4-217)||(23451086-23451300)
chr8 (1-227)||(26220156-26220381)
chr8 (4-197)||(24496237-24496431)
chr8 (4-227)||(17611512-17611734)
chr8 (4-177)||(24979771-24979942)
chr8 (94-221)||(273879-274007)
chr8 (94-221)||(641842-641970)
chr8 (1-73)||(22532354-22532426)
chr8 (1-73)||(22537039-22537111)
chr8 (1-73)||(39694500-39694572)
chr8 (92-203)||(13721456-13721567)
chr8 (117-222)||(5080825-5080930)
chr8 (94-221)||(827648-827776)
chr8 (92-203)||(16873579-16873690)
chr8 (89-222)||(26222590-26222724)
chr8 (107-227)||(16039583-16039703)
chr8 (1-73)||(44522399-44522470)
chr8 (94-206)||(20481057-20481170)
chr8 (92-192)||(3431810-3431910)
chr8 (117-221)||(24386456-24386560)
chr8 (18-73)||(32950661-32950716)
chr8 (92-199)||(17501807-17501914)
chr8 (107-227)||(30766234-30766354)
chr8 (1-73)||(39364532-39364604)
[»] chr3 (56 HSPs)
chr3 (1-227)||(45530825-45531052)
chr3 (1-220)||(37641717-37641935)
chr3 (1-220)||(29172073-29172289)
chr3 (4-216)||(14818700-14818911)
chr3 (4-220)||(13511677-13511894)
chr3 (4-220)||(24340168-24340382)
chr3 (89-227)||(8604442-8604581)
chr3 (1-227)||(36167135-36167360)
chr3 (1-227)||(12536256-12536482)
chr3 (1-220)||(22146980-22147197)
chr3 (4-220)||(12158894-12159112)
chr3 (4-220)||(52338176-52338390)
chr3 (1-227)||(34851521-34851745)
chr3 (99-227)||(11061694-11061823)
chr3 (1-227)||(10550908-10551133)
chr3 (4-170)||(52212653-52212818)
chr3 (89-227)||(17100085-17100224)
chr3 (1-227)||(21618986-21619211)
chr3 (4-227)||(17547693-17547914)
chr3 (2-206)||(20188353-20188554)
chr3 (1-159)||(9511139-9511296)
chr3 (1-159)||(9519114-9519271)
chr3 (11-227)||(15517258-15517473)
chr3 (89-222)||(11882726-11882860)
chr3 (1-71)||(37038808-37038878)
chr3 (3-227)||(11849818-11850039)
chr3 (95-202)||(2843651-2843758)
chr3 (117-222)||(13327077-13327182)
chr3 (107-227)||(51961663-51961783)
chr3 (107-227)||(53770473-53770593)
chr3 (92-203)||(18910610-18910721)
chr3 (94-227)||(23491806-23491941)
chr3 (1-72)||(42324194-42324265)
chr3 (89-219)||(54423453-54423584)
chr3 (2-158)||(13667306-13667460)
chr3 (1-73)||(19568430-19568503)
chr3 (126-227)||(20417764-20417864)
chr3 (89-227)||(23395320-23395460)
chr3 (94-227)||(38167343-38167478)
chr3 (107-227)||(16260894-16261014)
chr3 (1-73)||(17513588-17513659)
chr3 (94-213)||(3991999-3992119)
chr3 (20-73)||(178720-178773)
chr3 (4-73)||(3393976-3394045)
chr3 (107-227)||(13968123-13968243)
chr3 (107-227)||(13973598-13973718)
chr3 (20-73)||(18366752-18366805)
chr3 (18-73)||(12276556-12276611)
chr3 (92-199)||(40039425-40039532)
chr3 (92-199)||(50351132-50351239)
chr3 (4-73)||(13029384-13029452)
chr3 (92-133)||(17758759-17758800)
chr3 (92-133)||(19060079-19060120)
chr3 (92-191)||(16934513-16934612)
chr3 (4-73)||(13025792-13025860)
chr3 (195-227)||(52212811-52212843)
[»] scaffold2046 (1 HSPs)
scaffold2046 (4-222)||(801-1016)
[»] chr6 (36 HSPs)
chr6 (4-222)||(13750500-13750715)
chr6 (1-220)||(18259395-18259612)
chr6 (1-220)||(8226952-8227169)
chr6 (5-222)||(24267455-24267671)
chr6 (4-186)||(24441306-24441486)
chr6 (4-227)||(5109936-5110158)
chr6 (8-220)||(23532115-23532325)
chr6 (5-227)||(16447999-16448220)
chr6 (1-184)||(28948221-28948403)
chr6 (9-141)||(31468006-31468137)
chr6 (4-222)||(29415778-29415997)
chr6 (89-222)||(25650672-25650806)
chr6 (2-227)||(5289298-5289517)
chr6 (94-206)||(18776609-18776722)
chr6 (107-227)||(18003196-18003316)
chr6 (107-227)||(23994355-23994475)
chr6 (92-203)||(16231509-16231620)
chr6 (92-203)||(18087350-18087461)
chr6 (4-73)||(20177753-20177822)
chr6 (4-73)||(22158169-22158238)
chr6 (107-227)||(13621336-13621456)
chr6 (92-203)||(23977386-23977497)
chr6 (1-71)||(25753198-25753268)
chr6 (1-71)||(25755368-25755438)
chr6 (1-71)||(19102703-19102773)
chr6 (9-199)||(19174803-19174991)
chr6 (107-219)||(15735455-15735567)
chr6 (18-73)||(16132661-16132716)
chr6 (18-71)||(18659196-18659249)
chr6 (107-227)||(24563048-24563168)
chr6 (18-73)||(29847514-29847569)
chr6 (94-206)||(26089191-26089304)
chr6 (9-71)||(16136053-16136115)
chr6 (4-73)||(19443258-19443326)
chr6 (94-190)||(16135935-16136031)
chr6 (1-73)||(25348115-25348187)
[»] chr2 (25 HSPs)
chr2 (1-222)||(19358496-19358719)
chr2 (4-222)||(6477458-6477674)
chr2 (95-227)||(19659480-19659613)
chr2 (9-206)||(24087798-24087993)
chr2 (4-227)||(22703580-22703803)
chr2 (99-227)||(23822247-23822376)
chr2 (99-227)||(23831326-23831455)
chr2 (1-73)||(43707263-43707335)
chr2 (89-219)||(36891359-36891490)
chr2 (92-213)||(42178489-42178610)
chr2 (92-203)||(12642170-12642281)
chr2 (92-200)||(12636396-12636504)
chr2 (107-227)||(21274750-21274870)
chr2 (92-203)||(3799131-3799242)
chr2 (89-219)||(9653568-9653699)
chr2 (96-199)||(16935056-16935159)
chr2 (96-199)||(17005716-17005819)
chr2 (9-206)||(45617836-45618032)
chr2 (18-73)||(21245442-21245497)
chr2 (18-73)||(24273270-24273325)
chr2 (92-200)||(8943466-8943574)
chr2 (107-227)||(27366874-27366994)
chr2 (92-199)||(34877461-34877569)
chr2 (13-73)||(26904164-26904223)
chr2 (10-70)||(24383415-24383475)
[»] scaffold0037 (4 HSPs)
scaffold0037 (1-227)||(113190-113415)
scaffold0037 (1-227)||(118024-118249)
scaffold0037 (122-218)||(25409-25505)
scaffold0037 (94-227)||(94407-94542)
[»] scaffold0017 (3 HSPs)
scaffold0017 (1-220)||(732-952)
scaffold0017 (107-220)||(7589-7702)
scaffold0017 (92-199)||(26374-26480)
[»] scaffold0377 (1 HSPs)
scaffold0377 (4-220)||(16324-16540)
[»] chr5 (20 HSPs)
chr5 (4-227)||(8952262-8952483)
chr5 (1-220)||(40726303-40726520)
chr5 (9-206)||(21297585-21297781)
chr5 (11-206)||(21311130-21311324)
chr5 (4-222)||(22777291-22777508)
chr5 (89-221)||(21109334-21109467)
chr5 (3-227)||(18318427-18318650)
chr5 (1-70)||(21405851-21405920)
chr5 (1-227)||(20765475-20765699)
chr5 (95-227)||(22111577-22111710)
chr5 (4-227)||(22357125-22357346)
chr5 (94-219)||(20711518-20711644)
chr5 (117-227)||(21204360-21204470)
chr5 (92-200)||(9730912-9731020)
chr5 (107-221)||(21650138-21650252)
chr5 (13-227)||(10817415-10817628)
chr5 (1-168)||(23539431-23539595)
chr5 (94-221)||(22007197-22007325)
chr5 (4-73)||(22470588-22470656)
chr5 (92-160)||(20197648-20197716)
[»] scaffold0453 (1 HSPs)
scaffold0453 (4-227)||(3721-3943)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-220)||(40432-40650)
scaffold0117 (4-176)||(25790-25961)
[»] chr4 (34 HSPs)
chr4 (4-220)||(15373944-15374158)
chr4 (4-220)||(16223992-16224206)
chr4 (1-220)||(22354291-22354508)
chr4 (1-227)||(14280854-14281079)
chr4 (89-227)||(52266205-52266343)
chr4 (4-220)||(20898971-20899185)
chr4 (1-183)||(6512273-6512453)
chr4 (4-218)||(15368146-15368357)
chr4 (1-227)||(54798127-54798352)
chr4 (99-219)||(30233202-30233323)
chr4 (1-227)||(4830380-4830604)
chr4 (1-227)||(4833675-4833899)
chr4 (18-227)||(14931362-14931569)
chr4 (1-206)||(18230367-18230570)
chr4 (94-222)||(26921778-26921907)
chr4 (4-220)||(15371663-15371866)
chr4 (89-227)||(15852039-15852178)
chr4 (1-227)||(2584367-2584591)
chr4 (1-73)||(9870668-9870740)
chr4 (89-220)||(27028362-27028491)
chr4 (1-73)||(3338129-3338201)
chr4 (90-222)||(4615359-4615492)
chr4 (1-227)||(13447135-13447359)
chr4 (92-203)||(7132593-7132704)
chr4 (92-203)||(20000340-20000451)
chr4 (89-218)||(15403159-15403287)
chr4 (95-199)||(5683060-5683164)
chr4 (94-218)||(16157410-16157535)
chr4 (163-227)||(15273059-15273123)
chr4 (162-227)||(8574316-8574381)
chr4 (92-192)||(54363791-54363891)
chr4 (92-199)||(15214119-15214226)
chr4 (1-73)||(15991026-15991097)
chr4 (92-190)||(45314400-45314498)
[»] scaffold0720 (1 HSPs)
scaffold0720 (1-220)||(663-880)
[»] scaffold0181 (1 HSPs)
scaffold0181 (18-227)||(25756-25964)
[»] scaffold0331 (1 HSPs)
scaffold0331 (1-220)||(4319-4533)
[»] scaffold0149 (1 HSPs)
scaffold0149 (4-220)||(35765-35979)
[»] scaffold0175 (2 HSPs)
scaffold0175 (1-217)||(18463-18677)
scaffold0175 (143-221)||(14392-14470)
[»] scaffold0047 (1 HSPs)
scaffold0047 (89-227)||(76793-76932)
[»] scaffold0004 (4 HSPs)
scaffold0004 (1-227)||(75395-75621)
scaffold0004 (4-227)||(60032-60254)
scaffold0004 (10-222)||(72550-72765)
scaffold0004 (153-219)||(187612-187678)
[»] scaffold0107 (1 HSPs)
scaffold0107 (4-220)||(3505-3719)
[»] scaffold0429 (1 HSPs)
scaffold0429 (4-227)||(2221-2443)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-227)||(72262-72487)
[»] scaffold0371 (1 HSPs)
scaffold0371 (4-220)||(3489-3706)
[»] scaffold0247 (1 HSPs)
scaffold0247 (4-220)||(17473-17686)
[»] scaffold0021 (2 HSPs)
scaffold0021 (1-227)||(147228-147452)
scaffold0021 (95-219)||(87737-87862)
[»] scaffold0273 (1 HSPs)
scaffold0273 (4-206)||(7305-7506)
[»] scaffold0123 (2 HSPs)
scaffold0123 (1-199)||(6908-7105)
scaffold0123 (90-227)||(1574-1712)
[»] scaffold1276 (1 HSPs)
scaffold1276 (1-171)||(802-969)
[»] scaffold0083 (4 HSPs)
scaffold0083 (1-73)||(10976-11048)
scaffold0083 (1-73)||(5258-5330)
scaffold0083 (95-199)||(47-151)
scaffold0083 (95-199)||(5351-5455)
[»] scaffold0962 (1 HSPs)
scaffold0962 (20-206)||(853-1038)
[»] scaffold0825 (1 HSPs)
scaffold0825 (1-73)||(607-679)
[»] scaffold0256 (1 HSPs)
scaffold0256 (1-73)||(2066-2138)
[»] scaffold0261 (1 HSPs)
scaffold0261 (94-222)||(6690-6819)
[»] scaffold0174 (3 HSPs)
scaffold0174 (1-133)||(19405-19536)
scaffold0174 (1-66)||(11154-11219)
scaffold0174 (1-66)||(5034-5099)
[»] scaffold0597 (1 HSPs)
scaffold0597 (94-213)||(1666-1786)
[»] scaffold0251 (2 HSPs)
scaffold0251 (107-227)||(14089-14209)
scaffold0251 (163-203)||(22106-22146)
[»] scaffold0113 (1 HSPs)
scaffold0113 (4-76)||(35245-35317)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-227)||(117033-117257)
[»] scaffold0106 (1 HSPs)
scaffold0106 (2-73)||(21741-21812)
[»] scaffold0244 (1 HSPs)
scaffold0244 (94-206)||(23192-23305)
[»] scaffold0025 (1 HSPs)
scaffold0025 (94-227)||(146031-146166)
[»] scaffold0465 (1 HSPs)
scaffold0465 (94-214)||(10652-10773)
[»] scaffold0574 (1 HSPs)
scaffold0574 (107-219)||(10209-10321)
[»] scaffold0309 (2 HSPs)
scaffold0309 (94-227)||(8744-8878)
scaffold0309 (152-227)||(6592-6667)
[»] scaffold0447 (4 HSPs)
scaffold0447 (94-206)||(4021-4134)
scaffold0447 (94-206)||(8635-8748)
scaffold0447 (18-73)||(7610-7665)
scaffold0447 (18-73)||(12224-12279)
[»] scaffold0383 (2 HSPs)
scaffold0383 (94-206)||(6629-6742)
scaffold0383 (18-73)||(10219-10274)
[»] scaffold0126 (1 HSPs)
scaffold0126 (18-199)||(6682-6860)
[»] scaffold0080 (2 HSPs)
scaffold0080 (1-73)||(29741-29812)
scaffold0080 (1-73)||(35206-35277)
[»] scaffold0303 (1 HSPs)
scaffold0303 (94-227)||(687-822)
[»] scaffold0490 (1 HSPs)
scaffold0490 (94-227)||(5489-5623)
[»] scaffold0342 (1 HSPs)
scaffold0342 (122-227)||(5373-5479)
[»] scaffold0706 (1 HSPs)
scaffold0706 (107-227)||(7240-7361)
[»] scaffold0032 (1 HSPs)
scaffold0032 (94-206)||(55035-55148)
[»] scaffold1957 (1 HSPs)
scaffold1957 (89-192)||(120-224)
[»] scaffold0125 (1 HSPs)
scaffold0125 (92-199)||(28182-28289)
[»] scaffold0042 (1 HSPs)
scaffold0042 (4-73)||(51966-52034)
[»] scaffold0003 (1 HSPs)
scaffold0003 (140-227)||(147003-147091)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11054542 - 11054316
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  11054542 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgattttttt-gggtggttgaaa 11054444  T
Q  101 cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||||| || || ||||||||||||||||| |||||||||||  ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||    
T  11054443 cttgaatttttctatatattatgatagggctaagtgtcaggaacatataggtgaaaacggcatcgaaaacagattaacggtttgatttttatgcgcgaaa 11054344  T
Q  200 acgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||| ||||||||||||||| ||||    
T  11054343 acgtgaaggttgaaaatctgatgttgtc 11054316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19486185 - 19486403
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  19486185 tgaaaattgggattttcgcttgaatagtcggcgtctaaacgtttctgcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 19486281  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || ||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| | ||| ||||||||||||||    
T  19486282 acttgaatttttctatagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggattggtttttatgagcgaa 19486381  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  19486382 aacgtgaaggttgaaaatctga 19486403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 37784671 - 37784802
Alignment:
Q  97 gaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagc 195  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  37784671 gaaacttgaatttttctgtagattatgatagggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatgagc 37784770  T
Q  196 gaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| ||||| ||||||||||||||| ||||    
T  37784771 gaaaatgtgaaggttgaaaatctgatgctgtc 37784802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13256522 - 13256297
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||         ||||||||||    
T  13256522 tgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaatcgatttttt---ggtggttgaa 13256427  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| | || ||| ||||||  | |||||||||| ||||| ||||   ||||| | |||||    
T  13256426 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacaacatcgaaaacgggttaacggtttagattttacgcgcgaa 13256327  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  13256326 aacgtgaaaattagaaaatctgatgttgtc 13256297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48274312 - 48274087
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||| |||||||| |||        |||||||||||    
T  48274312 tgaaaattgggattttcgcttgaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttttggaaaccga---tttttgggtggttgaa 48274216  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| ||| ||||||||||||| |||||| |||| | ||||||| |  | ||| ||||||||| |||||||||| ||||  ||||| |||||| | |||||    
T  48274215 actggaatttttctgtagattgtgatagagctatgtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaatggtttggtttttaggcgcgaa 48274116  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | || |||||||||| ||||    
T  48274115 aacgtgaagggtggaaatctgatgctgtc 48274087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 17467607 - 17467830
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |   || ||||||||||| ||||||||||        ||||||||||||    
T  17467607 gaaaattgggattttcgcttgaaaactcggtgtctaaacgtttttgcaaaca---gagtatgtgaggttctggaaatcgagtttt---gggtggttgaaa 17467700  T
Q  101 -cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
     |||||||||| |||||||||||||||| |||||| ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||  ||||| | |||||    
T  17467701 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgcgaa 17467800  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  17467801 aacgtgaaaattagaaaatctgatgttgtc 17467830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 17585607 - 17585384
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |   || ||||||||||| ||||||||||        ||||||||||||    
T  17585607 gaaaattgggattttcgcttgaaaactcggtgtctaaacgtttttgcaaaca---gagtatgtgaggttctggaaatcgagtttt---gggtggttgaaa 17585514  T
Q  101 -cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
     |||||||||| |||||||||||||||| |||||| ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||  ||||| | |||||    
T  17585513 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgcgaa 17585414  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  17585413 aacgtgaaaattagaaaatctgatgttgtc 17585384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3288981 - 3289205
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| || |||||||        |||||||||||    
T  3288981 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctgaaaatcgattttt---gggtggttgaa 3289075  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||| || |||  |||||||| ||||||| || |||||  ||||  ||||||| |||||    
T  3289076 acttgaaattttctgtagattatgatagagctaagtgtcaggaacgtgtaggcaaaaacggcatcgaaaatgggttaacaatttggattttatgcgcgaa 3289175  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    || ||||| ||| |||||||||||| ||||    
T  3289176 aatgtgaaagttagaaaatctgatgctgtc 3289205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13698861 - 13698933
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13698861 tgaagattgggattttcgcttgaaaagtaggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 13698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 111955 - 112081
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| | || |||||||||||| |||| ||||| | ||||||||||||| | |||||||||||||| |||||||| |||||    
T  111955 gttgaaacttgaatttttctgtacactaagatagggctaagtgtcatgaacacgtaggtgaaaacggcattgaaaacggattaacggtttgattattatg 112054  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     ||||||||||| | ||||||||||||    
T  112055 cgcgaaaacgtggaggttgaaaatctg 112081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 26070944 - 26071070
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||| ||| |||||||| ||||||| ||||||||||||||    
T  26070944 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaatggcatcgaaaacagattaacggtttgatttttatg 26071043  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     ||||||||||  | ||||||||||||    
T  26071044 cgcgaaaacgttgaggttgaaaatctg 26071070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 26094731 - 26094857
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||| ||| |||||||| ||||||| ||||||||||||||    
T  26094731 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaatggcatcgaaaacagattaacggtttgatttttatg 26094830  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     ||||||||||  | ||||||||||||    
T  26094831 cgcgaaaacgttgaggttgaaaatctg 26094857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 2028488 - 2028359
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| ||||| |||| |||||||||||| ||||  |||| | ||||||||||||| |||||||| ||||||| ||||||||||||||    
T  2028488 gttgaaacttgactttttctgtacattaagatagggctaagtgtcataaacaagtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatg 2028389  T
Q  193 agcgaaaacgtgaatgttgaaaatctgatg 222  Q
     ||||||||||  | |||||||||||||||    
T  2028388 cgcgaaaacgtagaagttgaaaatctgatg 2028359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 3894589 - 3894477
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||| |||| |||||||||||  |||| | ||| | ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |    
T  3894589 ttttctgtacattaagatagggctaaatgtcatggacacgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtgga 3894490  T
Q  207 tgttgaaaatctg 219  Q
     ||||||||||||    
T  3894489 ggttgaaaatctg 3894477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 25124010 - 25123890
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| | ||||||| |||| ||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |    
T  25124010 ttttctgtgcattatgatagtgttaagagttaggagcatgtgagtgaaaacggcgtcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 25123911  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  25123910 agttgaaaatctgatgttgtc 25123890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 42056992 - 42057112
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||||||||||| | |||||||||||||||| |||||||||||||| ||||||||||  |    
T  42056992 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggtgaaaacgacatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 42057091  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  42057092 agttgaaaatctgatgttgtc 42057112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 370815 - 370704
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  370815 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 370716  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  370715 gcgcgaaaacgt 370704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 2190878 - 2190998
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||| ||||||||| ||||||||| |||||| |||||||||||||| ||||||||||  |    
T  2190878 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggcgaaaacggcatcgaaaacgaattaacggtttgatttttatgcgcgaaaacgtaga 2190977  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  2190978 agttgaaaatctgatgctgtc 2190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 13758098 - 13757987
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| |||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  13758098 tggttgaaacatgaaatttttgtaaattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 13757999  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  13757998 gcgcgaaaacgt 13757987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 14251426 - 14251537
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||||||||| |||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  14251426 tggttgaaacatgaaatttttgtagattataatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 14251525  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  14251526 gcgcgaaaacgt 14251537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 37380708 - 37380485
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||||| |   || ||||||||||| ||||||||||        ||||||||||||    
T  37380708 gaaaattgggatctttgcttgaaaactcggtgtctcaacgtttttgcaaaca---gagtatgtgaggttctggaaatcgagtttt---gggtggttgaaa 37380615  T
Q  101 -cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
     |||||||||| |||||||||||||||| |||||| ||||||| |  | ||| ||||||| | | |||||||| ||||| |||||  ||||| | |||||    
T  37380614 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgcgtaggcgaaaacgacattgaaaacgggttaacggtttggattttacgcgcgaa 37380515  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  37380514 aacgtgaaaattagaaaatctgatgttgtc 37380485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33001990 - 33001920
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  33001990 tgaaaattgggattttctcttaaaaagtcggt--ctaaacgtttttacaaataagggattatgtgaggtttgg 33001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 3049154 - 3049019
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||||||| | || ||| ||||||||| |||||||| | ||||| ||||| ||||||      
T  3049154 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacaggttaacggtttggtttttact 3049055  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     |||||||||||||  || |||||||||||| ||||    
T  3049054 cgcgaaaacgtgaaaattggaaaatctgatgttgtc 3049019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10063124 - 10063199
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa 76  Q
    ||||||||| |||||||||||||| ||||| |||||||| |||||||||||| || ||||||||||||||| ||||    
T  10063124 tgaaaattgagattttcgcttgaagagtcgatgtctaaatgtttttgcaaatgagtgattatgtgaggttttgaaa 10063199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 18980548 - 18980659
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||| ||| |||| ||| ||||||||||||||| || ||| || |||| |||| |||||||||| || ||||||| |||||||| |||||||||| ||    
T  18980548 tggttggaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggtgaaaactgcatcgaaaatggattaacggtttgattttaat 18980647  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  18980648 gcgcgaaaacgt 18980659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 40554739 - 40554932
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| ||||  |||||||||||||| || |||||||||||||||| ||| ||||||||||||||| |||||||||        |||||||||| |||    
T  40554739 aaattggaatttatgcttgaaaagtcggagtttaaacgtttttgcaaacaagagattatgtgaggtttgggaaatcga---ttttggggtggttgagact 40554835  T
Q  103 tgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||| |  |||||||||||||||| || ||| |||||||   || ||| |||||| || || ||| | ||||||| |||||| ||||| | ||||||    
T  40554836 tgaaatagctgtagattatgatagagccaagtgtcaggagagtgtaggcgaaaacagcatcaaaatccgattaacggtttgaattttacgtgcgaaa 40554932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 15927296 - 15927186
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaa-cggcgtcgaaaacggattaactgtttgattttta 190  Q
    |||||||||| |||| ||| ||||||||||||||| || |||  | |||| |||| ||| ||||| |||| |||||||||||||||| ||||||||||||    
T  15927296 tggttgaaacatgaaatttttgtagattatgatagtgccaagtattaggagcatgtaggcgaaaaacggcatcgaaaacggattaacggtttgattttta 15927197  T
Q  191 tgagcgaaaac 201  Q
    || ||||||||    
T  15927196 tgcgcgaaaac 15927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 10063204 - 10063316
Alignment:
Q  106 attttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtga 205  Q
    ||||| |||||||| |||||| |||||| |||||||    | ||||||||||||| |||||||||| ||||| ||| |||||||| | ||||||||||||    
T  10063204 attttatgtagattgtgatagagctaagtgtcaggagtgcgtaggtgaaaacggcatcgaaaacgggttaacggttcgatttttaggcgcgaaaacgtga 10063303  T
Q  206 atgttgaaaatct 218  Q
    | | |||||||||    
T  10063304 agggtgaaaatct 10063316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 15525268 - 15525388
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  ||||||||||  ||||| || ||||  ||| ||| ||||||||| | | |||||||||||| |||||||||||||| ||||||||||  |    
T  15525268 ttttctgtgcattatgatagtactaagtgttaggagaatgtaggcgaaaacggcattgcaaacggattaacggtttgatttttatgcgcgaaaacgtaga 15525367  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  15525368 agttgaaaatctgatgctgtc 15525388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 21734746 - 21734866
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| ||||||  |||||| | |  ||| ||||||||| |||||||||| ||||| ||||| |||||||| | ||||||| |||    
T  21734746 ttttcggtagattatgatagagctaagtctcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcgtgaaaacgagaa 21734845  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  21734846 ggtcgaaaatctgatgctgtc 21734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 8756385 - 8756440
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  8756385 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 8756440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 4280849 - 4280729
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||| | |||||| | |||||||||||||    
T  4280849 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 4280750  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  4280749 ggtcgaaaatctgatgctgtc 4280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29004900 - 29004831
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttg 72  Q
    ||||||||| ||||||  |||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  29004900 tgaaaattgagatttttccttgaaaagtcggtgtctaaacg--tttgcaaataagagactatgtgaggtttg 29004831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 8249470 - 8249520
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataag 55  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  8249470 aaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataag 8249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 28720439 - 28720332
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||| ||||||| ||||||||||||||||||| || ||| ||||||| | || ||| ||||||||| || ||| | ||||||| |||||| |||||     
T  28720439 tggttgagacttgaaatttctgtagattatgatagagccaagtgtcaggagcgtgtaggcgaaaacggcatcaaaatccgattaacggtttgaattttac 28720340  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  28720339 gcgcgaaa 28720332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 13898301 - 13898230
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa 76  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| ||||||||||||||||||||    
T  13898301 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttggaaa 13898230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 21734167 - 21734270
Alignment:
Q  92 tggttgaaacttgaattttct----gtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    ||||||||||||||||||| |    |||||||||||||| ||||||  |||||| | |  ||| ||||||||| |||||||||| ||||| ||||| |||    
T  21734167 tggttgaaacttgaattttttttcggtagattatgatagagctaagtctcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggttt 21734266  T
Q  188 ttat 191  Q
    ||||    
T  21734267 ttat 21734270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 48744363 - 48744297
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgag 67  Q
    ||||||||||  |||  |||||||||||||| ||||||||||| ||||||||||| || ||||||||    
T  48744363 tgaaaattggagtttatgcttgaaaagtcggagtctaaacgttcttgcaaataagagactatgtgag 48744297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 13866472 - 13866573
Alignment:
Q  122 gatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgtt-gaaaatctga 220  Q
    ||||| |||||| ||||||| | || ||| ||||||| | |||||||| | ||||| ||||| |||||| | |||||||||||||  || ||||||||||    
T  13866472 gatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacagtttaacggtttggtttttacgcgcgaaaacgtgaaaattggaaaatctga 13866571  T
Q  221 tg 222  Q
    ||    
T  13866572 tg 13866573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 51476822 - 51476596
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||        ||||||||||||    
T  51476822 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgtaaataagggattgtgtgaggtttggaaatcgattttttt-gggtggttgaaa 51476724  T
Q  101 cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  51476723 cttgaatttttctgtagattatgatagggctaagtttcaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatgagcgaaa 51476624  T
Q  200 acgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||  ||||||||||||||| ||||    
T  51476623 acgtgagggttgaaaatctgatgctgtc 51476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 52984053 - 52983831
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| |||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  52984053 aaattggaatttacacttgaaaagtcggagtctaaacgtttttgcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 52983957  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||| || |||||    
T  52983956 tgaatatttctgtagattatgatagggctaagtttcaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatgcgcaaaaac 52983857  T
Q  202 gtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| ||||||||||||||| ||||    
T  52983856 gtgaaggttgaaaatctgatgctgtc 52983831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 21473618 - 21473404
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  21473618 aaattgggattttcgtttgaatagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 21473523  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||||||||||||  | |||||    
T  21473522 tgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgttcaaaaac 21473423  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  21473422 gtgaaggttgaaaatctga 21473404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 18824446 - 18824232
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    |||||| |||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| |         |||||||||||||    
T  18824446 aaattgagattttcgtttgaaaagtcggtgtctaaaggtttt-gcaaataagagattatgtgaggtttgggaaatcaattttta---ggtggttgaaact 18824351  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||| ||| |||||||||| ||||| |||||||||||||| ||||||||    
T  18824350 tgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaatggcatcgaaaacgggttaacggtttgatttttatgtgcgaaaac 18824251  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  18824250 gtgaaggttgaaaatctga 18824232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 13527936 - 13528157
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  13527936 aaattgggattttcccttgaaaagtcggtgtctaaacgttt--gcaaataagcgattatgtgaggttttggaaatcgattttt---gggtggttgaaact 13528030  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| ||||||||||||||| ||||||| ||||||| | || ||| ||||||| | ||||||| || ||||| |||||  ||||| | ||||||||    
T  13528031 tgaatttttctgtagattatgataaggctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaatgggttaacggtttggattttacgcgcgaaaac 13528130  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||| ||| |||||||||||| ||||    
T  13528131 gtgaaagttagaaaatctgatgttgtc 13528157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 7320817 - 7321014
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||        |||||||| ||    
T  7320817 tgaaaattgtgattt-cgcttgaaaagtcggtgtataaacgtttttgcaaataagtgattatgtgaggttctggaaatcga---tttttgggtggttaaa 7320912  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||||||||| |||||||||||| |||||| ||||||| | || ||| ||||||| | |||||||||||||||| |||||  ||||| | ||||||    
T  7320913 acttgaattttctgcagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacggattaacggtttggattttacgcgcgaaa 7321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 51324334 - 51324137
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||        || |||||||     
T  51324334 tgaaaattgggattttcgcttcaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgggaaaatga--ttcttgggatggttgag 51324237  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||||||| ||||||||||||||||||| || ||| ||||||| |||| ||| ||||||| | || ||| | ||||||| |||||| ||||| | ||||||    
T  51324236 acttgaaatttctgtagattatgatagagccaagtgtcaggagcatgtaggcgaaaacgacatcaaaatccgattaacggtttgaattttacgcgcgaaa 51324137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 18271151 - 18270929
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  18271151 aaattgggattttcgtttgaaaaattggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 18271056  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| ||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||| | ||||| |||||  ||||| | ||||||||    
T  18271055 tgaatctttttgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacaggttaacggtttggattttacgcgcgaaaac 18270956  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  18270955 gtgaaaattagaaaatctgatgttgtc 18270929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 18275805 - 18275583
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  18275805 aaattgggattttcgtttgaaaaattggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 18275710  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| ||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||| | ||||| |||||  ||||| | ||||||||    
T  18275709 tgaatctttttgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacaggttaacggtttggattttacgcgcgaaaac 18275610  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  18275609 gtgaaaattagaaaatctgatgttgtc 18275583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 27330432 - 27330558
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||||||  |||||||||||||||| ||||||||||||||    
T  27330432 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggtatcgaaaacggattaacagtttgatttttatg 27330531  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     ||||||||||||| ||||||||||||    
T  27330532 cgcgaaaacgtgaaggttgaaaatctg 27330558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 20058312 - 20058088
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||||| |||||| |||        ||||||||||||    
T  20058312 gaaaattgggattttcgcttgaaaagttggtgtctaaacg-ttttgcaaataagtaattatgtgaggttctggaaaccga---tttttgggtggttgaaa 20058217  T
Q  101 cttga-attttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||  |||| ||||||||||||||| |||||  ||||||| | || ||| ||||||||| |||||||||| ||||  |||||  ||||| |  |||||    
T  20058216 cttgattttttttgtagattatgatagagctaactgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaatggtttggattttacgcacgaaa 20058117  T
Q  200 acgtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||||  || |||||||||||| ||||    
T  20058116 acgtgaaaattggaaaatctgatgttgtc 20058088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 21239267 - 21239464
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttg-gaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||  ||        || |||||||     
T  21239267 tgaaaattgggattttcgcttgaaaagtcggtgtcaaaacgattttgcaaataagggattatgtgaggtttgagaaaatga--ttcttcggatggttgag 21239364  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||  |||||||||||||||||| || ||| ||||||| | || |||  |||||||| || ||| | ||||||| |||||| ||||| | ||||||    
T  21239365 acttgaaaattctgtagattatgatagagccaagtgtcaggagcgtgtaggcaaaaacggcatcaaaatccgattaacggtttgaattttacgcgcgaaa 21239464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 35054347 - 35054221
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| || || |||| |||||||||| | |||  ||||| | ||||||||||||| |||||||||||||||| ||||||||||||||    
T  35054347 gttgaaacttgaatttttctttacattaagatagggctaggtgtcttgaacacgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatg 35054248  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     |||||||| || | ||||||||||||    
T  35054247 cgcgaaaacttggaggttgaaaatctg 35054221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 20825453 - 20825573
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||| ||||||| | |||||||||||||||| |||||||||||||| ||||||||||  |    
T  20825453 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggcgaaaacgacatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 20825552  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  20825553 agttgaaaatctgatgttgtc 20825573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20030863 - 20030934
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  20030863 tgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 20030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 17148296 - 17148185
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| |||||| || ||||||||||||||||  ||||||||||||    
T  17148296 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaactgcatcgaaaacggattaacgatttgatttttat 17148197  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  17148196 gcgcgaaaacgt 17148185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7791779 - 7791850
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  7791779 tgaaaattgggactttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 7791850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21660183 - 21660130
Alignment:
Q  20 ttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||| |||||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  21660183 ttgaagagtcggagtctaaacgtttttgaaaaaaagagattatgtgaggtttgg 21660130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 39061084 - 39060977
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||| ||||| | ||||||||||||||||||| | |||| ||||||| | || ||| ||||||| | || ||| | ||||||| |||||| |||||     
T  39061084 tggttgagacttggaatttctgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacgacatcaaaatctgattaacagtttgaattttac 39060985  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  39060984 gcgcgaaa 39060977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 22583881 - 22584102
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaactt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  22583881 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgattttt---gggtggttgaaactt 22583977  T
Q  104 gaattttct-gtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||  ||||||| ||||| |||||||| || ||||||    
T  22583978 gaatttttttgtagattatgatagggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaaatagattaacggtttgttttttatgcgcaaaaacg 22584077  T
Q  203 tgaatgttgaaaatctgatgatgtc 227  Q
    |||| ||||||||||| ||||||||    
T  22584078 tgaaggttgaaaatctaatgatgtc 22584102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 23889630 - 23889410
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaactt 103  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  23889630 aaattgagattttcgcttgaaaaatcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgatttt----gggtggttgaaactt 23889535  T
Q  104 gaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    ||||||| ||||||||||||||||||||||   | ||||||||| ||||||||||||| |||||||| ||||||| |||||||||| ||| ||||||| |    
T  23889534 gaatttttctgtagattatgatagggctaaatattaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgattttaatgcgcgaaaatg 23889435  T
Q  203 tgaatgttgaaaatctgatgatgtc 227  Q
    |||| ||||||||| ||||| ||||    
T  23889434 tgaaggttgaaaatttgatgttgtc 23889410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3273719 - 3273499
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaa 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||    
T  3273719 tgaaaattgggattttcgcttgaaaagttggtgtctaaacgtttttgcaaataagggagtatgtgaggtttggaaatcgattttttttgggtggttgaaa 3273620  T
Q  101 cttgaattt-tctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||||||||| |||||||| |||||||| |||||| ||||||| | || ||| ||||||||| || ||||||| |||||  |||| |||||||| ||| ||    
T  3273619 cttgaatttatctgtagaatatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcaaaaacgggttaacgatttggtttttatgcgcggaa 3273520  T
Q  200 acgtgaatgttgaaaatctga 220  Q
    ||||||| |||||||||||||    
T  3273519 acgtgaaggttgaaaatctga 3273499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 34302376 - 34302161
Alignment:
Q  5 aattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaacttg 104  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||        ||||||||||||||||    
T  34302376 aattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttggaaatcgattttttttgggtggttgaaacttg 34302278  T
Q  105 aatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgt 203  Q
    |||||| | |||||||||||||| |||||| || |||| | || ||| ||||||||| |||||||||| ||||| | ||| |||||||| ||||||||||    
T  34302277 aatttttccgtagattatgatagagctaagtgttaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggcttggtttttatgcgcgaaaacgt 34302178  T
Q  204 gaatgttgaaaatctga 220  Q
    | | |||||||||||||    
T  34302177 gcaggttgaaaatctga 34302161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 23451300 - 23451086
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa-tcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||        ||||||||||||||    
T  23451300 aaattgggattttagtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttggaaaatcgattttttttgggtggttgaaact 23451202  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| | |||| ||||||| | || ||| ||||||||| |||||||||  ||||| |||||||||||| | ||||||||    
T  23451201 tgaatttttctgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgagttaacggtttgatttttacgcgcgaaaac 23451102  T
Q  202 gtgaatgttgaaaatc 217  Q
    ||||||||| ||||||    
T  23451101 gtgaatgttaaaaatc 23451086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26220381 - 26220156
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||| ||||| | |        |||||||||||    
T  26220381 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaaaccaattttt---gggtggttgaa 26220285  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    |||  |||||| |||||||||||||||| |||||| ||||||| |  | |||  |||||||| |||||||||| ||||| |||||||||||| | |||||    
T  26220284 actgaaatttttctgtagattatgatagagctaagtgtcaggagcgcgtaggcaaaaacggcatcgaaaacgggttaacggtttgatttttaggcgcgaa 26220185  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  26220184 aacgtgaagggtgaaaatctgatgctgtc 26220156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 24496431 - 24496237
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttg-gaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||         |||||||||||||    
T  24496431 aaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgtgaaatcgattttttttaggtggttgaaact 24496333  T
Q  103 tgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcga 197  Q
    |||| |||||||||||||||||||| |||||| ||||||| | || ||| ||||||| | |||||||||| ||||| ||| | |||||||| ||||    
T  24496332 tgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgccatcgaaaacgggttaacggttaggtttttatgcgcga 24496237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 17611512 - 17611734
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  17611512 aaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgggaaatcga---tttttgggtggttgaaact 17611607  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| ||||||||||||||| | |||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  |||||   ||||||||    
T  17611608 tgaatctttttgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacacgcgaaaac 17611707  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  17611708 gtgaaaattagaaaatctgatgttgtc 17611734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 24979942 - 24979771
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||| ||||| |        ||||||||||||||    
T  24979942 aaattgggattttcgtttgaaaaattggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcaattttt---gggtggttgaaact 24979847  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaac 177  Q
    |||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| ||||||| || |||||    
T  24979846 tgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaatgggttaac 24979771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 274007 - 273879
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||| ||||| ||||  ||||||||||  ||||| || |||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  274007 gttgaaacttggatttttctgtgcattatgatagtactaagtgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatg 273908  T
Q  193 agcgaaaacgtgaatgttgaaaatctgat 221  Q
     ||||||||||| | ||||||||||||||    
T  273907 cgcgaaaacgtggaggttgaaaatctgat 273879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 641842 - 641970
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||| ||||| ||||  ||||||||||  ||||| || |||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  641842 gttgaaacttggatttttctgtgcattatgatagtactaagtgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatg 641941  T
Q  193 agcgaaaacgtgaatgttgaaaatctgat 221  Q
     ||||||||||| | ||||||||||||||    
T  641942 cgcgaaaacgtggaggttgaaaatctgat 641970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22532354 - 22532426
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22532354 tgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22537039 - 22537111
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22537039 tgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22537111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39694500 - 39694572
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39694500 tgaaagttgagattttcgcttgaaaagtcggtgtctaaacatttttgcaaataagggattatgtgaggtttgg 39694572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 13721456 - 13721567
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  13721456 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 13721555  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  13721556 gcgcgaaaacgt 13721567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 5080930 - 5080825
Alignment:
Q  117 attatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaat 216  Q
    ||||||||||  ||||| | |||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||| |||||||| || | |||||||||    
T  5080930 attatgatagtactaagtggcaggaacatgtaggtgaaaacggcatcgaaaacagattaacagtttgatttttatgcgcgaaaacatgtaggttgaaaat 5080831  T
Q  217 ctgatg 222  Q
    ||||||    
T  5080830 ctgatg 5080825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 827648 - 827776
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||| ||||| ||||  ||||||||||  ||||| || |||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  827648 gttgaaacttggatttttctgtgcattatgatagtactaagtgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatg 827747  T
Q  193 agcgaaaacgtgaatgttgaaaatctgat 221  Q
     ||||||||||| | ||  ||||||||||    
T  827748 cgcgaaaacgtggaggtccaaaatctgat 827776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 16873579 - 16873690
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| |||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  16873579 tggttgaaacatgaaatttttgtaaattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 16873678  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  16873679 gcgcgaaaacgt 16873690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 26222590 - 26222724
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    ||||||||||||||  |||||| ||||||||| |||||| |||||| ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||||||    
T  26222590 gggtggttgaaactgaaatttttctgtagattgtgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttgattt 26222689  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatg 222  Q
    ||| | |||||||| |||| | |||||||||||||    
T  26222690 ttaggcgcgaaaacatgaagggtgaaaatctgatg 26222724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 16039583 - 16039703
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||||||||||| | |||||||||||||||  |||||||||||||| ||||||||||  |    
T  16039583 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggtgaaaacgacatcgaaaacggattaatggtttgatttttatgcgcgaaaacgtaga 16039682  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||| ||| ||||    
T  16039683 agttgaaaatctcatgctgtc 16039703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44522399 - 44522470
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  44522399 tgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 44522470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 20481170 - 20481057
Alignment:
Q  94 gttgaaacttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||| ||||||||| |||| ||||||| |||| ||||||| |||| ||| ||||||||| |||||||||| ||||| ||||| |||||| |    
T  20481170 gttgaaacttgaatttttctgtacattaagatagggttaagtgtcaggagcatgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttacg 20481071  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||| ||||    
T  20481070 cgcgaaaacttgaa 20481057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 3431810 - 3431910
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| |  ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  3431810 tggttgaaacatgaaatttttgtagattatgatagtgtcaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 3431909  T
Q  192 g 192  Q
    |    
T  3431910 g 3431910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 24386456 - 24386560
Alignment:
Q  117 attatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaat 216  Q
    |||||||||| |||||| || | || |||| ||||||||||| | |||||||||||||||| |||||||||||||| ||||||| ||  | |||||||||    
T  24386456 attatgatagtgctaagtgttaagagcatgtaggtgaaaacgacatcgaaaacggattaacggtttgatttttatgcgcgaaaatgtagaagttgaaaat 24386555  T
Q  217 ctgat 221  Q
    |||||    
T  24386556 ctgat 24386560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 32950716 - 32950661
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  32950716 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 32950661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 17501914 - 17501807
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||||||||||| ||||||||||||||||||| || ||| ||||||  | || ||| ||||||||| || ||| | ||||||| |||||| |||||     
T  17501914 tggttgaaacttgaaatttctgtagattatgatagagccaagtgtcaggggcgtgtaggcgaaaacggcatcaaaatccgattaacggtttgaattttac 17501815  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  17501814 gcgcgaaa 17501807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 30766234 - 30766354
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| | |||||||| ||||| ||| | |||||| | |||||||||||||    
T  30766234 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcattgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 30766333  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  30766334 ggtcgaaaatctgatgctgtc 30766354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39364604 - 39364532
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||  |||  ||||||||| |||| |||||||||||  |||||||||| || |||||||| |||||    
T  39364604 tgaaaattggagtttatgcttgaaaattcggagtctaaacgttcatgcaaataagagactatgtgagttttgg 39364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45530825 - 45531052
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |        ||||||||| ||    
T  45530825 tgaaaattaggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataggggattatgtgaggtttggaaatcaattttttttgggtggttggaa 45530924  T
Q  101 cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  45530925 cttgaatttttctgtagattatgatagggccaagtgtcaggaacatgtaggtgaaaacggtatcgaaaacagattaacggtttgatttttatgagcgaaa 45531024  T
Q  200 acgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||  ||||||||| ||||| ||||    
T  45531025 acgtgagggttgaaaatatgatgttgtc 45531052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37641717 - 37641935
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  37641717 tgaaaattgggattttcgcttgaatagtcggtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 37641813  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || ||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  37641814 acttgaatttttctatagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgagcgaa 37641913  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  37641914 aacgtgaaggttgaaaatctga 37641935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29172073 - 29172289
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  29172073 tgaaaattgggattttcccttgaaa-gtcggtgtctaaacgtttt-gcaaataagcgattatgtgaggttttggaaatcgattttt---gggtggttgaa 29172167  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| |||||||||||||| |||||    
T  29172168 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgtgcgaa 29172267  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  29172268 aacgtgaaggttgaaaatctga 29172289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 14818911 - 14818700
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| ||||  |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||| ||        ||||||||||||||    
T  14818911 aaattggaatttatgcttgaaaagtcggagtctaaatgtttttgcaaataagagattatgtgaggtttgggaaatagattttg---gggtggttgaaact 14818815  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||| ||||||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||| |||||||||||||| ||||||||    
T  14818814 tgaatctttatgtatattatgatagggctaagtgtcaggaacatgtaggtgaaaatggcatcgaaaacagattaacggtttgatttttatgcgcgaaaac 14818715  T
Q  202 gtgaatgttgaaaat 216  Q
    ||||| |||||||||    
T  14818714 gtgaaggttgaaaat 14818700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 13511894 - 13511677
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||| ||        ||||||||||||||    
T  13511894 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagcgataatgtgaggtttgggaaatagattttttttgggtggttgaaact 13511796  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| ||||||  |||||| | || ||| ||||||||| |||||||||| ||||| ||||| |||||||| | ||||||    
T  13511795 tgaatttttctgtagattatgatagagctaagtttcaggagcgtgtaggagaaaacggcatcgaaaacgggttaacggtttggtttttatgcgggaaaac 13511696  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  13511695 gtgaaggttgaaaatctga 13511677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 24340168 - 24340382
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||| | ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  24340168 aaattgggatttttgtttgaatagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 24340263  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||||||||||||  | |||||    
T  24340264 tgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgttcaaaaac 24340363  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  24340364 gtgaaggttgaaaatctga 24340382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 8604581 - 8604442
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||| |||||||||    
T  8604581 gggttgttgaaacttgaatttttctgtacattatgatagggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgattt 8604482  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| ||||||||||||| ||||||||||||||| ||||    
T  8604481 ttatgcgcgaaaacgtgaaggttgaaaatctgatgctgtc 8604442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36167360 - 36167135
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||||| || ||||||||||||||| ||||| |||        |||||||||||    
T  36167360 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgttttggcaaatgagtgattatgtgaggttttggaaaccgattttt---gggtggttgaa 36167264  T
Q  100 acttgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| |||| |||||||||||| |||||| |||||| ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||||||||| | |||||    
T  36167263 actggaatctttctgtagattgtgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttaggcgcgaa 36167164  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  36167163 aacgtgaagggtgaaaatctgatgctgtc 36167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12536482 - 12536256
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |        || ||||||||    
T  12536482 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaaccaa---tttttggatggttgaa 12536386  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| | || ||| ||||||| | |||||||||| ||||| |||||  ||||| | | |||    
T  12536385 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacgggttaacggtttggattttacgcgagaa 12536286  T
Q  199 aacgtg-aatgttgaaaatctgatgatgtc 227  Q
    |||||| ||  |||||||||||||| ||||    
T  12536285 aacgtgaaaatttgaaaatctgatgttgtc 12536256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 22146980 - 22147197
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||| ||| ||||||||||||| | |||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  22146980 tgaaaactggaattttcgcttgaagattcggtgtctaaatgtttt-gcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 22147075  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || |||||||||||||||||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  22147076 acttgaatttttctatagattatgatagggctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgagcgaa 22147175  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  22147176 aacgtgaaggttgaaaatctga 22147197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 12159112 - 12158894
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnn--gggtggttgaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||          ||||||||||||    
T  12159112 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatctgaggtttgggaaatcgattttttttttgggtggttgaaa 12159014  T
Q  101 cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||||||| ||||| |||||||||| | |||| ||||| | | || ||| ||||| ||| |||||||||| ||||| |||||||||||||| ||||||    
T  12159013 cttgaatttttctgtaaattatgatagagttaagtgtcag-agcgtgtaggcgaaaatggcatcgaaaacgggttaacggtttgatttttatgcgcgaaa 12158915  T
Q  200 acgtgaatgttgaaaatctga 220  Q
    ||||||| |||||||||||||    
T  12158914 acgtgaaggttgaaaatctga 12158894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 52338176 - 52338390
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||| |||||        ||| |||| |||||    
T  52338176 aaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattgtgtgaggttttggagatcga---tttttgggcggttaaaact 52338271  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| |||||| |||||||   |  |||  |||||||| |||||||||| ||||| |||||||||||||| ||||||||    
T  52338272 tgaattttcctgtagattatgatagagctaagtgtcaggagagtttaggcaaaaacggcatcgaaaacgggttaacggtttgatttttatgtgcgaaaac 52338371  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  52338372 gtgaaggttgaaaatctga 52338390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34851521 - 34851745
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  34851521 tgaaaattgggattttcccttgaagagtcggtgtataaacgtttt-gcaaataagtgattatgtgaggttttggaaatcgatattt---gggtggttgaa 34851616  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    |||| |||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||| | | |||    
T  34851617 acttaaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgtgaa 34851716  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||  | |||||||||||| ||||    
T  34851717 aacgtgaaattagaaaatctgatgttgtc 34851745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 11061694 - 11061823
Alignment:
Q  99 aacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcga 197  Q
    |||||||||||| ||||| |||| ||||| |||||| |||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  11061694 aacttgaatttttctgtacattaagatagagctaagtgtcatgaacatgtaggtgaaaacggtgtcgaaaacggattaacggtttgatttttatgcgcga 11061793  T
Q  198 aaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||||||||||||||||||| ||||    
T  11061794 aaacgtgaatgttgaaaatctgatgctgtc 11061823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10551133 - 10550908
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||| |||||||| |||        |||||||||||    
T  10551133 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaaaccga---tttttgggtggttgaa 10551037  T
Q  100 acttga-attttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| ||  |||| |||| ||| |||||| |||||| || |||| |  | ||| ||||||||| |||||||||||||||| |||| ||||||| | |||||    
T  10551036 actggattttttttgtatattgtgatagagctaagtgttaggagcgcgtaggcgaaaacggcatcgaaaacggattaacggttttatttttaggcgcgaa 10550937  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  10550936 aacgtgaagggtgaaaatctgatgctgtc 10550908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 52212653 - 52212818
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| |||| ||||||||||||||| || ||||| |||||||||||||| |||||||||||| |||| |||||||        ||||||||||||||    
T  52212653 aaattggaatttacgcttgaaaagtcggagtgtaaacatttttgcaaataagagattatgtgaggcttgggaaatcgattttg---gggtggttgaaact 52212749  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacg 170  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||    
T  52212750 tgaatctttctgtagattatgatagggctaagtgtcaggaacatgtagatgaaaacggcatcgaaaacg 52212818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 17100224 - 17100085
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| |||| ||||| |||||| |||| ||||| | ||||||||||||| |||||||||||||||| | |||||||    
T  17100224 gggttgttgaaacttgaatttttctgtacattaagatagagctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacggattaacggattgattt 17100125  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| ||||||||||||| ||||||||||||||| ||||    
T  17100124 ttatgcgcgaaaacgtgaaggttgaaaatctgatgttgtc 17100085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21619211 - 21618986
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||| |||||| ||||||| || ||||||||||| ||||| |||||| |||||||||||||||||| ||||| |||        |||||||||||    
T  21619211 tgaaaattgagatttttgcttgaagagacggtgtctaaatgttttggcaaatgagggattatgtgaggttttggaaaccgattttt---gggtggttgaa 21619115  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    |||  |||||| ||||||||| |||||| | |||| ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||||||||| | |||||    
T  21619114 actgtaatttttctgtagattgtgatagagttaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttaggcgcgaa 21619015  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  21619014 aacgtgaagggtgaaaatctgatgctgtc 21618986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 17547693 - 17547914
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    |||||||||||||| ||||||||||| ||||||||||||||  ||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  17547693 aaattgggattttcccttgaaaagtcagtgtctaaacgttt--gcaaataagcgattatgtgaggttttggaaatcgattttt---gggtggttgaaact 17547787  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||| |||||| ||||||| ||||||| | || ||| ||||||| | ||||||| || ||||| |||||  ||||| | ||||||||    
T  17547788 tgaatttttctgtagataatgataaggctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaatgggttaacggtttggattttacgcgcgaaaac 17547887  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  17547888 gtgaaaattagaaaatctgatgttgtc 17547914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 20188554 - 20188353
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |   || ||||||||||| ||||||||||        ||||||||||||    
T  20188554 gaaaattgggattttcgcttgaaaactcggtgtctaaacgtttttgcaaaca---gagtatgtgaggttctggaaatcgagtttg---gggtggttgaaa 20188461  T
Q  101 -cttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
     |||||||||| |||||||||||||||| |||||| |||||||||  | ||| ||||||||| |||||||||| ||||  |||||  ||||| | |||||    
T  20188460 acttgaatttttctgtagattatgatagagctaagtgtcaggaacgcgtaggcgaaaacggcatcgaaaacgggttaatggtttggattttacgcgcgaa 20188361  T
Q  199 aacgtgaa 206  Q
    ||||||||    
T  20188360 aacgtgaa 20188353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9511139 - 9511296
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||  ||        || |||||||     
T  9511139 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtgacgtttgggaaaatga--ttcttgggatggttgag 9511236  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacgg 159  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| | || ||| ||||||||    
T  9511237 acttgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgg 9511296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9519114 - 9519271
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||  ||        || |||||||     
T  9519114 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtgacgtttgggaaaatga--ttcttgggatggttgag 9519211  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacgg 159  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| | || ||| ||||||||    
T  9519212 acttgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgg 9519271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 15517473 - 15517258
Alignment:
Q  11 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa-tcgannnnnnnngggtggttgaaacttgaattt 109  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||| | ||        |||| ||||||||||||||||    
T  15517473 gattttcgcttgaaaagtcagtgtctaaacgtttt-gcaaataagtgattatgtgaggttttgaaaattgattttt---gggtagttgaaacttgaattt 15517378  T
Q  110 t-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatg 208  Q
    | |||||||||||||||| ||||||||| |||| | || ||| ||||||||| || ||||||| ||||| |||||  ||||| | |||||||||||||      
T  15517377 ttctgtagattatgatagagctaagagttaggagcgtgtaggcgaaaacggcatcaaaaacgggttaacggtttggattttacgcgcgaaaacgtgaaaa 15517278  T
Q  209 tt-gaaaatctgatgatgtc 227  Q
    || |||||||||||| ||||    
T  15517277 ttggaaaatctgatgttgtc 15517258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 11882726 - 11882860
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||| ||||||||||||| ||||  |||||||||||| |||| |||||||||| | ||||||||||||| | |||||| ||||||| |||||||||    
T  11882726 gggttgttaaaacttgaatttttctgtgcattatgataggggtaagtgtcaggaacaagtaggtgaaaacggcattgaaaacagattaacggtttgattt 11882825  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatg 222  Q
    ||||| ||||||||||||| ||||||||| |||||    
T  11882826 ttatgcgcgaaaacgtgaaggttgaaaatatgatg 11882860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37038878 - 37038808
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37038878 tgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 37038808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 11849818 - 11850039
Alignment:
Q  3 aaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaac 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |   || |||| |||||| ||||||||||        |||||||||||||    
T  11849818 aaaattgggattttcgcttgaaaactcggtgtctaaacgtttttgcaaaca---gagtatgcgaggttctggaaatcga---gttttgggtggttgaaac 11849911  T
Q  102 ttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaa 200  Q
    ||||| |||||||||||||||||||| |||||| ||||| | |  | ||| ||||||||  |||||||||| ||||| |||||  | ||| | |||||||    
T  11849912 ttgaatttttctgtagattatgatagagctaagtgtcagaagcgcgtaggcgaaaacggtatcgaaaacgggttaacggtttggatcttacgcgcgaaaa 11850011  T
Q  201 cgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||  || |||||||||||| ||||    
T  11850012 cgtgaaaattagaaaatctgatgttgtc 11850039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 2843758 - 2843651
Alignment:
Q  95 ttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgag 194  Q
    ||||||||||||||||||||| |||| ||||||| |||| |||| ||||| | ||||||||||||| |||||||||||||||  |||||||||||||| |    
T  2843758 ttgaaacttgaattttctgtacattaagatagggttaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacggattaatggtttgatttttatgcg 2843659  T
Q  195 cgaaaacg 202  Q
    ||||||||    
T  2843658 cgaaaacg 2843651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 13327077 - 13327182
Alignment:
Q  117 attatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaat 216  Q
    ||||||||||| ||||| |||||||||| | ||||||||||||| |||||||| | ||||| |||||||||||||| ||||||||||||| |||||||||    
T  13327077 attatgataggtctaagtgtcaggaacaagtaggtgaaaacggcatcgaaaacagtttaacggtttgatttttatgtgcgaaaacgtgaaggttgaaaat 13327176  T
Q  217 ctgatg 222  Q
     |||||    
T  13327177 ttgatg 13327182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 51961663 - 51961783
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| | ||||||| |||| ||||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |    
T  51961663 ttttctgtgcattatgatagtgttaagagttaggagcatgtgagtgaaaacggcgtcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 51961762  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  51961763 agttgaaaatctgatgttgtc 51961783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 53770593 - 53770473
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||  |    
T  53770593 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 53770494  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  53770493 agttgaaaatctgatgttgtc 53770473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 18910721 - 18910610
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  18910721 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 18910622  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  18910621 gcgcgaaaacgt 18910610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 23491941 - 23491806
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | |||||||||||||  ||||||||||||||| ||||| |||||| |    
T  23491941 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacaagtaggtgaaaacggcaccgaaaacggattaacggtttggtttttacg 23491842  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     |||||||||||||  || |||||||||||| ||||    
T  23491841 cgcgaaaacgtgaaaattggaaaatctgatgttgtc 23491806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42324194 - 42324265
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttg 72  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42324194 tgaagattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaggaattatgtgaggtttg 42324265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 54423584 - 54423453
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| |||  |||||||||||| |||| ||||| | ||||||||||| | ||||||||||||||||  || |||||    
T  54423584 gggttgttgaaacttgaatttttctgtacattcagatagggctaagtgtcatgaacacgtaggtgaaaacgacatcgaaaacggattaacaattcgattt 54423485  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctg 219  Q
    ||||| ||||||| ||||| ||||||||||||    
T  54423484 ttatgcgcgaaaatgtgaaggttgaaaatctg 54423453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 13667306 - 13667460
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||         |||||||||||    
T  13667306 gaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagagattatgcgaggtttgggaaatcgattttta---ggtggttgaaa 13667401  T
Q  101 cttgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacg 158  Q
    ||||| | ||||||||||||||||||| | |||| ||||||| | || ||| |||||||    
T  13667402 cttgagtctttctgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacg 13667460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19568430 - 19568503
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgc-aaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  19568430 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaaataagggattatccgaggtttgg 19568503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 20417864 - 20417764
Alignment:
Q  126 gggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctgatgatg 225  Q
    |||||||| |||||||||||| ||||||||||||| |||||||  ||||||| |||||||||||||| ||||||||||||| |||| |||||||||| ||    
T  20417864 gggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaaatagattaacagtttgatttttatgcgcgaaaacgtgaaggttg-aaatctgatgttg 20417766  T
Q  226 tc 227  Q
    ||    
T  20417765 tc 20417764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 23395320 - 23395460
Alignment:
Q  89 gggtggttgaaacttgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||    
T  23395320 gggtggttgaaacttgaatctttttgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacagtttggatt 23395419  T
Q  188 ttatgagcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||| | |||||||||||||  || |||||||||||| ||||    
T  23395420 ttacgcgcgaaaacgtgaaaattagaaaatctgatgttgtc 23395460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 38167478 - 38167343
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||||||   || ||||||||||||| |||||||||| ||||| ||||| |||||| |    
T  38167478 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaggagtgtgtaggtgaaaacggcatcgaaaacgggttaacggtttggtttttacg 38167379  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     |||||||||||||  || |||||||||||| ||||    
T  38167378 cgcgaaaacgtgaaaattggaaaatctgatgttgtc 38167343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 16261014 - 16260894
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||  || |||| |||| ||||||||| ||| ||||||||||||||||  ||||||||||||| ||||||||||  |    
T  16261014 ttttctgtgcattatgatagtgctaattgttaggagcatgtaggtgaaaatggcatcgaaaacggattaacgatttgatttttatgcgcgaaaacgtaga 16260915  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  16260914 agttgaaaatctgatgttgtc 16260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17513659 - 17513588
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| |||||    
T  17513659 tgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgagttttgg 17513588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 3992119 - 3991999
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| || || | |  |||||||||||| |||| ||| | | ||||||||||||| ||| |||||||||||| |||||||| |||||    
T  3992119 gttgaaacttgaatttttctttacactgagatagggctaagtgtcatgaaaacgtaggtgaaaacggcatcggaaacggattaacggtttgattattatg 3992020  T
Q  193 agcgaaaacgtgaatgttgaa 213  Q
     ||||||| ||||| ||||||    
T  3992019 cgcgaaaatgtgaaagttgaa 3991999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 178720 - 178773
Alignment:
Q  20 ttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  178720 ttgaagagtcggagtctaaacgtttttgcaaataagagattatgtgaggtttgg 178773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3393976 - 3394045
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||| ||||  |||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||    
T  3393976 aaattggaatttatgcttgaaaagtcagagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 3394045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 13968123 - 13968243
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||| | |||||| | |||||||||||||    
T  13968123 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 13968222  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  13968223 ggtcgaaaatctgatgctgtc 13968243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 13973598 - 13973718
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||| | |||||| | |||||||||||||    
T  13973598 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 13973697  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  13973698 ggtcgaaaatctgatgctgtc 13973718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 18366752 - 18366805
Alignment:
Q  20 ttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  18366752 ttgaaaagtcggagtctaaacgtttttgcaaacatgagattatgtgaggtttgg 18366805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 12276611 - 12276556
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||| |||| ||||||||||||||||||| ||| |||||| ||||||||||    
T  12276611 gcttgaaaaatcggagtctaaacgtttttgcaaacaagagattatctgaggtttgg 12276556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 40039425 - 40039532
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||| ||||||||| ||||||||||||||||||| |||||| ||||||| | ||  || |||| |||| || |||   ||||||| |||||| ||||||    
T  40039425 tggtttaaacttgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtgggcgaaagcggcatcaaaatttgattaacggtttgaattttat 40039524  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  40039525 gcgcgaaa 40039532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 50351132 - 50351239
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||| ||||||| ||||||||||||||||||| | |||| ||||||| | || ||| ||||||| | || ||| | ||||||| |||||| |||||     
T  50351132 tggttgagacttgaaatttctgtagattatgatagagttaagtgtcaggaccgtgtaggcgaaaacgacatcaaaatccgattaacggtttgaattttac 50351231  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  50351232 gcgcgaaa 50351239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 13029384 - 13029452
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  13029384 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 13029452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 17758759 - 17758800
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaag 133  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  17758759 tggttgaaacttgaaatttctgtagattatgatagagctaag 17758800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 19060079 - 19060120
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaag 133  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  19060079 tggttgaaacttgaaatttctgtagattatgatagagctaag 19060120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 16934513 - 16934612
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||| ||| |  ||| ||||||| | || ||| |||||||||||| ||| | ||||||| |||||| ||||||    
T  16934513 tggttgaaacatgaaatttttgtagattatgttagagtcaagtgtcaggagcgtgtaggcgaaaacggcgtcaaaatccgattaacggtttgaattttat 16934612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 13025792 - 13025860
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| |||||| ||||||||||    
T  13025792 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatttgaggtttgg 13025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 52212811 - 52212843
Alignment:
Q  195 cgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||||||| ||||||||||||||||||||    
T  52212811 cgaaaacgtgaaggttgaaaatctgatgatgtc 52212843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2046 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold2046
Description:

Target: scaffold2046; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 1016 - 801
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaactt 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||    
T  1016 aaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaggtttggaaatcgattttt---gggtggttgaaactt 920  T
Q  104 gaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||| ||| |||||||| ||||||| |||||||||||||| |||||||||    
T  919 gaatctttctgtagattatgatagggctaagtgtcaggagcatgtaggtgaaaa-ggcatcgaaaacagattaacagtttgatttttatgcgcgaaaacg 821  T
Q  203 tgaatgttgaaaatctgatg 222  Q
    |||| |||||||||||||||    
T  820 tgaaggttgaaaatctgatg 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 13750500 - 13750715
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaactt 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||    
T  13750500 aaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaggtttggaaatcgattttt---gggtggttgaaactt 13750596  T
Q  104 gaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||| ||| |||||||| ||||||| |||||||||||||| |||||||||    
T  13750597 gaatctttctgtagattatgatagggctaagtgtcaggagcatgtaggtgaaaa-ggcatcgaaaacagattaacagtttgatttttatgcgcgaaaacg 13750695  T
Q  203 tgaatgttgaaaatctgatg 222  Q
    |||| |||||||||||||||    
T  13750696 tgaaggttgaaaatctgatg 13750715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18259395 - 18259612
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  18259395 tgaaaattgggattttcgcttgaaaagtcggtgtttgaacgtttt-gcaaataagtgattatgtgaggttttggaaatcgattttt---gggtggttgaa 18259490  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | |  |||  |||||||| |||||||||| ||||| |||||||| ||||| |||||    
T  18259491 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtttaggcaaaaacggcatcgaaaacgggttaacggtttgattattatgtgcgaa 18259590  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  18259591 aacgtgaaggttgaaaatctga 18259612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8226952 - 8227169
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  8226952 tgaaaactggaattttcgcttgaagattcggtgtctaaacgtttt-gcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 8227047  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || |||||||||||||||||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  8227048 acttgaatttttctatagattatgatagggctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgagcgaa 8227147  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  8227148 aacgtgaaggttgaaaatctga 8227169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 24267671 - 24267455
Alignment:
Q  5 aattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaactt 103  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||        || ||||||||||||    
T  24267671 aattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgatgttt---ggctggttgaaactt 24267576  T
Q  104 gaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    ||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||| | |||||||||    
T  24267575 gaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgcgaaaacg 24267476  T
Q  203 tgaatgtt-gaaaatctgatg 222  Q
    ||||  || ||||||||||||    
T  24267475 tgaaaattggaaaatctgatg 24267455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 24441486 - 24441306
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||        ||||||||||||||    
T  24441486 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtggggtttgggaaatcgattttt---gggtggttgaaact 24441391  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatt 186  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || |||  |||||||| |||||||||| ||||| ||||||||    
T  24441390 tgaatatttttgtagattatgatagggctaagtgtcaggagcgtgtaggcaaaaacggcatcgaaaacgggttaacggtttgatt 24441306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 5109936 - 5110158
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| |||||||||||||||||| |||||||||  |||||||||||||||| |||||||        || |||||||||||    
T  5109936 aaattgggattttcgtttgaaaaatcggtgtctaaacgtttt-gcaaataagatattatgtgaggtttgggaaatcgattttt---ggttggttgaaact 5110031  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||| |||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||| | ||||||||    
T  5110032 tgagtttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgcgaaaac 5110131  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  5110132 gtgaagattagaaaatctgatgttgtc 5110158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 23532115 - 23532325
Alignment:
Q  8 tgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaacttgaa 106  Q
    |||||||||| |||||| | |||||||||||||||||| ||||||||| |||||||||| |||| ||||| |||        |||||||| ||||||||     
T  23532115 tgggattttcacttgaagattcggtgtctaaacgtttt-gcaaataagtgattatgtgaagttttggaaaccgattttt---gggtggtttaaacttgat 23532210  T
Q  107 tttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtga 205  Q
    |||| || |||||||||||||||||||| ||||||  | |  ||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||    
T  23532211 tttttctatagattatgatagggctaagtgtcaggtgcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgagcgaaaacgtga 23532310  T
Q  206 atgttgaaaatctga 220  Q
    | |||||||||||||    
T  23532311 aggttgaaaatctga 23532325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 16447999 - 16448220
Alignment:
Q  5 aattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaaact- 102  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||| ||||||||||||        ||||||||||||||     
T  16447999 aatttggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaaatcga---tttttgggtggttgaaactg 16448095  T
Q  103 tgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    | | |||||| ||| || |||||| |||| | ||||||| |  | ||||||||||||| |||||||| | ||||| |||||||||||| | |||||||||    
T  16448096 taatttttctttagtttgtgatagagctatgtgtcaggagcgcgtaggtgaaaacggcatcgaaaactggttaacggtttgatttttaggcgcgaaaacg 16448195  T
Q  203 tgaatgttgaaaatctgatgatgtc 227  Q
    |||| | ||||||||||||| ||||    
T  16448196 tgaagggtgaaaatctgatgctgtc 16448220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28948403 - 28948221
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||        || ||||||||    
T  28948403 tgaaaattggaatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttttggaaaatga--ttcttgggatggttgaa 28948306  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttga 184  Q
    ||||||| ||||||||||||||||||| || ||| ||||||| |||  ||| ||||||||| || ||| | ||||||| ||||||    
T  28948305 acttgaaatttctgtagattatgatagagccaagtgtcaggagcatataggcgaaaacggcatcaaaatccgattaacggtttga 28948221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 31468006 - 31468137
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttgaa- 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||        ||||||||||||||||||     
T  31468006 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaatcga---tttttgggtggttgaaacttgaat 31468102  T
Q  107 ttttctgtagattatgatagggctaagagtcagga 141  Q
    |||||||||||||||||||| | |||| |||||||    
T  31468103 ttttctgtagattatgatagagttaagtgtcagga 31468137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 29415778 - 29415997
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    |||||| |||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |        ||||||||||||||    
T  29415778 aaattgcgattttcgtttgaaaaatcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcaattttt---gggtggttgaaact 29415873  T
Q  103 tgaat---tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    |||||   ||||||||||||||||||| |||||| ||||||| | || ||| ||||||| | ||||||| || ||||| |||||  ||||||| ||||||    
T  29415874 tgaatctttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaatgggttaacggtttggattttatgcgcgaaa 29415973  T
Q  200 acgtgaatgtt-gaaaatctgatg 222  Q
    |||||||  || ||||||||||||    
T  29415974 acgtgaaaattagaaaatctgatg 29415997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 25650806 - 25650672
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| |||| |||| ||||||| |||||||||||| ||||||||||||| ||||||   ||||||| |||||||||    
T  25650806 gggttgttgaaacttgaatttttctgtacattaagataaggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaattagattaacagtttgattt 25650707  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatg 222  Q
    ||||| ||||||||||||| | |||||||||||||    
T  25650706 ttatgcgcgaaaacgtgaaggatgaaaatctgatg 25650672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 5289298 - 5289517
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| |   || |||| |||||| ||||||||||        ||||||||||||    
T  5289298 gaaaatttggattttcgcttgaaaactcggtgtctaaacgtttttgcaaaca---gagtatgcgaggttctggaaatcgagtttt---gggtggttgaaa 5289391  T
Q  101 cttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaa 200  Q
    ||||||||  |||||||||||||||| |||||| |||||||    | ||| ||||||||| |||||||||| ||||| |||||  ||||| | |||||||    
T  5289392 cttgaatt--ctgtagattatgatagagctaagtgtcaggagtgcgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttacgcgcgaaaa 5289489  T
Q  201 cgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||  || |||||||||||| ||||    
T  5289490 cgtgaaaattagaaaatctgatgttgtc 5289517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 18776722 - 18776609
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||||||| |||||||| ||||||| ||||||||||||||    
T  18776722 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatg 18776623  T
Q  193 agcgaaaacgtgaa 206  Q
     | |||||||||||    
T  18776622 cgtgaaaacgtgaa 18776609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 18003196 - 18003316
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||||||||||||| ||||||||| |||||| |||||||||||||| ||||||||||  |    
T  18003196 ttttctgtgcattatgatagtgctaagtgtaaggagcatgtaggtgaaaacggcatcgaaaacgaattaacggtttgatttttatgcgcgaaaacgtaga 18003295  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  18003296 agttgaaaatctgatgctgtc 18003316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 23994475 - 23994355
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||  |    
T  23994475 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacagtttgatttttatgcgcgaaaacgtaga 23994376  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  23994375 agttgaaaatctgatgttgtc 23994355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 16231620 - 16231509
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  16231620 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 16231521  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  16231520 gcgcgaaaacgt 16231509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 18087350 - 18087461
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| |||||| || |||||||||||||||| |||||||||||||    
T  18087350 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaactgcatcgaaaacggattaacggtttgatttttat 18087449  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  18087450 gcgcgaaaacgt 18087461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 20177822 - 20177753
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||    
T  20177822 aaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgg 20177753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 22158169 - 22158238
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||    
T  22158169 aaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgg 22158238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 13621336 - 13621456
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||  || |||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| || |||| ||  |    
T  13621336 ttttctgtgcattatgatagtgctaattgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcaaaaatgtaga 13621435  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  13621436 agttgaaaatctgatgctgtc 13621456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 23977497 - 23977386
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| |||||||||| || ||| || |||| |||| ||| | ||||||| |||||||||||||||| |||||||||||||    
T  23977497 tggttgaaacatgaaatttttgtaaattatgatagtgccaagtgttaggagcatgtaggcggaaacggcatcgaaaacggattaacggtttgatttttat 23977398  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  23977397 gcgcgaaaacgt 23977386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25753268 - 25753198
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    |||| ||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25753268 tgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgaggttt 25753198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25755438 - 25755368
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    |||| ||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25755438 tgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgaggttt 25755368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19102703 - 19102773
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    |||||||||||||||||||||||| |||  ||||||||| |||||||||||| || |||||||||||||||    
T  19102703 tgaaaattgggattttcgcttgaagagtaagtgtctaaatgtttttgcaaatgagtgattatgtgaggttt 19102773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 19174991 - 19174803
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaaacttgaat 107  Q
    |||||||||| |||| |||||||||| ||| || ||||||||||||| |||||||||||| ||||||||  ||        || || |||||||||||||    
T  19174991 gggattttcgtttgagaagtcggtgtttaagcgcttttgcaaataagcgattatgtgaggttttggaaaatga---ttttgggatgcttgaaacttgaat 19174895  T
Q  108 tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||| ||||||||||||||| | |||| ||||||| |  | ||| ||||||| | | |||||||| |||||  ||||| ||||||| ||||||    
T  19174894 tttatgtagattatgatagagttaagtgtcaggagcgcgtaggcgaaaacgacattgaaaacgggttaacaatttgaattttatgcgcgaaa 19174803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 15735455 - 15735567
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||  || |||| |||| ||||||||||||| || ||||||||||||| |||||||||||| |  ||||||||||||    
T  15735455 ttttctgtgcattatgatagtgctaattgttaggagcatgtaggtgaaaacggcatcaaaaacggattaacagtttgatttttacgcacgaaaacgtgaa 15735554  T
Q  207 tgttgaaaatctg 219  Q
      | |||||||||    
T  15735555 attggaaaatctg 15735567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16132661 - 16132716
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  16132661 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 16132716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 18659249 - 18659196
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  18659249 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggttt 18659196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 24563168 - 24563048
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||| | |||||| | |||||||||||||    
T  24563168 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 24563069  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  24563068 ggtcgaaaatctgatgctgtc 24563048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29847514 - 29847569
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||    
T  29847514 gcttgaaaagtcggagtctaaacatttttgcaaacaagagattatgtgaggtttgg 29847569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 26089304 - 26089191
Alignment:
Q  94 gttgaaacttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||| ||||||| | |||| |||||||||||| |||| ||||| | ||  |||||| ||  ||||||||||||||| ||||| ||||||      
T  26089304 gttgaaacttgaaattttctgcatattaagatagggctaagtgtcatgaacaagtagaggaaaacagcaccgaaaacggattaacagtttggtttttaca 26089205  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  26089204 tgcgaaaacgtgaa 26089191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 16136115 - 16136053
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt 71  Q
    ||||||||||  ||| |||||||||| ||| | |||||||||||||| |||||||||||||||    
T  16136115 gggattttcgtgtgagaagtcggtgtttaagcatttttgcaaataagcgattatgtgaggttt 16136053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 19443258 - 19443326
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  19443258 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 19443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 16136031 - 16135935
Alignment:
Q  94 gttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattttta 190  Q
    ||||||||||||||||| ||||||||||||||| | || | ||||||| |    ||| ||||||||| | |||||||| ||||| |||||| |||||    
T  16136031 gttgaaacttgaattttatgtagattatgatagagttatgtgtcaggagcgcataggcgaaaacggcattgaaaacgggttaacggtttgaatttta 16135935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25348187 - 25348115
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||  |||  ||||||||| |||| ||||||||||| ||||||||||| || |||||||| |||||    
T  25348187 tgaaaattggagtttatgcttgaaaattcggagtctaaacgttcttgcaaataagagactatgtgagttttgg 25348115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19358719 - 19358496
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnn-gggtggttgaa 99  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  19358719 tgaaaattgagattttcgcttgaaacgttggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgatttttttttgggtggttgaa 19358620  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| ||||| |||||||||| | |||| |||||||||||| ||||||||||  | |||||||| ||||||| ||||||||||||||||||||    
T  19358619 acttgaatttttctgtatattatgatagagttaagtgtcaggaacatgtaggtgaaaacaacatcgaaaacagattaacggtttgatttttatgagcgaa 19358520  T
Q  199 aacgtgaatgttgaaaatctgatg 222  Q
    |||||||  |||||||||||||||    
T  19358519 aacgtgatggttgaaaatctgatg 19358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 6477458 - 6477674
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  6477458 aaattgggattttcccttgaaaagtcggtgtctaaacgttt--gcaaataagcgattatgtgaggttttggaaatcgattttt---gggtggttgaaact 6477552  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||| |||||| ||||||| ||||||| | || ||| ||||||||| || |||| || ||||| |||||  ||||| | ||||||||    
T  6477553 tgaatttttctgtagataatgataaggctaagtgtcaggagcgtgtaggcgaaaacggcatcaaaaatgggttaacggtttggattttacgcgcgaaaac 6477652  T
Q  202 gtgaatgtt-gaaaatctgatg 222  Q
    ||||| ||| ||||||||||||    
T  6477653 gtgaaagttagaaaatctgatg 6477674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 19659613 - 19659480
Alignment:
Q  95 ttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatga 193  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||     
T  19659613 ttgaaatttgaatttttctgtacattatgatagggctaagtgtcaggaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgatttttatgc 19659514  T
Q  194 gcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||||||||  |||||||||||||| ||||    
T  19659513 gcgaaaacgtgaagtttgaaaatctgatgttgtc 19659480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 24087798 - 24087993
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaaacttgaat 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||        |||| ||||||||||||||    
T  24087798 gggattttcgcttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaataga---tttttgggtagttgaaacttgaat 24087893  T
Q  108 -tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
     ||||||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| || ||  ||||  ||||| | |||||||||||||    
T  24087894 gtttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttgacgatttggattttacgcgcgaaaacgtgaa 24087993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 22703803 - 22703580
Alignment:
Q  4 aaattgggatttt-cgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaac 101  Q
    ||||||||||||| || ||||||| | |||||||||||||||| ||||||||| |||||||||||||| ||||||||||        |||||||||||||    
T  22703803 aaattgggatttttcgtttgaaaaattggtgtctaaacgtttt-gcaaataagtgattatgtgaggttctggaaatcgattttt---gggtggttgaaac 22703708  T
Q  102 ttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaa 200  Q
    ||||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| ||||||| || |||||  ||||  ||||| | |||||||    
T  22703707 ttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaatgggttaacgatttggattttacgcgcgaaaa 22703608  T
Q  201 cgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||  || |||||||||||| ||||    
T  22703607 cgtgaagattagaaaatctgatgttgtc 22703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 23822247 - 23822376
Alignment:
Q  99 aacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcga 197  Q
    |||||||||||| ||||| |||| |||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||| |||||  |||    
T  23822247 aacttgaatttttctgtacattaagatagggctaagtgtcatgaacatgtaggtgaaaacggcatcgaaaacggattaacggtttgattgttatgctcga 23822346  T
Q  198 aaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||| |||  |||||||||| ||||    
T  23822347 aaacgtgaaggttcgaaatctgatgctgtc 23822376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 23831326 - 23831455
Alignment:
Q  99 aacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcga 197  Q
    |||||||||||| ||||| |||| |||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||| |||||  |||    
T  23831326 aacttgaatttttctgtacattaagatagggctaagtgtcatgaacatgtaggtgaaaacggcatcgaaaacggattaacggtttgattgttatgctcga 23831425  T
Q  198 aaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||| |||  |||||||||| ||||    
T  23831426 aaacgtgaaggttcgaaatctgatgctgtc 23831455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43707263 - 43707335
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  43707263 tgaaaattgggattttcgcttgaaaggtcggtgtctaaacgtttttgcaaataagtgattatgtgaggtttgg 43707335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 36891359 - 36891490
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||||||| ||||||| |||||||| |||||| ||    
T  36891359 gggttgttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaatggattaacggtttgagtt 36891458  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctg 219  Q
    ||||| ||||||||||  | ||||||||||||    
T  36891459 ttatgcgcgaaaacgtagaggttgaaaatctg 36891490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 42178489 - 42178610
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||  ||||||||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  42178489 tggttgaaacatgaaattcttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 42178588  T
Q  192 gagcgaaaacgtgaatgttgaa 213  Q
    | ||||||||||| | ||||||    
T  42178589 gcgcgaaaacgtggaagttgaa 42178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 12642170 - 12642281
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| |||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  12642170 tggttgaaacatgaaatttttgtaaattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 12642269  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  12642270 gcgcgaaaacgt 12642281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 12636396 - 12636504
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| | ||||||| |||||||||||||||| |||||||||||||    
T  12636396 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcggaaacggcatcgaaaacggattaacggtttgatttttat 12636495  T
Q  192 gagcgaaaa 200  Q
    | |||||||    
T  12636496 gcgcgaaaa 12636504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 21274750 - 21274870
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  ||| |||||| |||||| || |||| |||| ||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||  |    
T  21274750 ttttctgtgcattgtgatagtgctaagtgttaggagcatgtaggcgaaaacggcatcgaaaatggattaacggtttgatttttatgcgcgaaaacgtaga 21274849  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  21274850 agttgaaaatctgatgttgtc 21274870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 3799131 - 3799242
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| | |||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  3799131 tggttgaaacatgaaatttttgtaaaatatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 3799230  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  3799231 gcgcgaaaacgt 3799242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 9653568 - 9653699
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| || || |||| |||||  ||||| |||| ||||| | ||||||||||| | |||||||||||||||| |||||||||    
T  9653568 gggttgttgaaacttgaatttttctatacattaagatagaactaagtgtcatgaacacgtaggtgaaaacgacatcgaaaacggattaacggtttgattt 9653667  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctg 219  Q
    ||| | |||||||||||||  | |||||||||    
T  9653668 ttacgcgcgaaaacgtgaaattggaaaatctg 9653699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 16935159 - 16935056
Alignment:
Q  96 tgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagc 195  Q
    |||||| |||| ||||||||||||||||||| |||||| ||||||| | || ||| |||||||||||| ||| | ||||||| |||||| ||||||| ||    
T  16935159 tgaaacatgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcgtcaaaatccgattaacggtttgaattttatgcgc 16935060  T
Q  196 gaaa 199  Q
    ||||    
T  16935059 gaaa 16935056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 17005819 - 17005716
Alignment:
Q  96 tgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagc 195  Q
    |||||| |||| ||||||||||||||||||| |||||| ||||||| | || ||| |||||||||||| ||| | ||||||| |||||| ||||||| ||    
T  17005819 tgaaacatgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcgtcaaaatccgattaacggtttgaattttatgcgc 17005720  T
Q  196 gaaa 199  Q
    ||||    
T  17005719 gaaa 17005716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 45617836 - 45618032
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttgaa- 106  Q
    ||||||||||  ||||||||| |||| ||| | |||||||||||||| |||||||||||||| ||||||||||        |||||| |||||||||||     
T  45617836 gggattttcgtgtgaaaagtccgtgtataagcatttttgcaaataagcgattatgtgaggttctggaaatcga---ttttagggtgggtgaaacttgaat 45617932  T
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    |||||  ||||||||| ||   |||||   ||||| | || ||| |||||||||||||||||| ||||||| |||||  ||||| | |||||||||||||    
T  45617933 ttttcaatagattatggtatatctaagttccaggagcgtgtaggcgaaaacggcgtcgaaaacagattaacagtttggattttacgcgcgaaaacgtgaa 45618032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 21245497 - 21245442
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  21245497 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 21245442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 24273270 - 24273325
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  24273270 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 24273325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 8943574 - 8943466
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| | ||||| | ||||||| ||| |||| |||||||||||||    
T  8943574 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcggaaacgacatcgaaaatggagtaacggtttgatttttat 8943475  T
Q  192 gagcgaaaa 200  Q
    | |||||||    
T  8943474 gcgcgaaaa 8943466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 27366874 - 27366994
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||| |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||| | |||||| | |||||||||||||    
T  27366874 ttttcggtagattatgatagagctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggttgggtttttacgcgcgaaaacgtgaa 27366973  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     || |||||||||||| ||||    
T  27366974 ggtcgaaaatctgatgctgtc 27366994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 34877569 - 34877461
Alignment:
Q  92 tggttgaaacttgaattt-tctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattttta 190  Q
    |||||||||||||||||| |||||||| |||||||| |||||| ||||||| | ||  || ||||||||| |||||||| ||||||  |||||| |||||    
T  34877569 tggttgaaacttgaatttctctgtagaatatgatagagctaagtgtcaggagcgtgttggcgaaaacggcatcgaaaacagattaatggtttgaatttta 34877470  T
Q  191 tgagcgaaa 199  Q
     | ||||||    
T  34877469 cgcgcgaaa 34877461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 26904223 - 26904164
Alignment:
Q  13 ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  26904223 ttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 26904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 24383475 - 24383415
Alignment:
Q  10 ggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt 70  Q
    |||||||||  || ||||||| ||| ||| || ||||||||||||| ||||||||||||||    
T  24383475 ggattttcgtgtgcaaagtcgatgtttaagcgcttttgcaaataagtgattatgtgaggtt 24383415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 113190 - 113415
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||        |||||||||||    
T  113190 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgatgttctggaaatcgattttt---gggtggttgaa 113286  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||  |||||  |||||| ||||||| |||||    
T  113287 acttgaatttttctgtagattatgatagggctaagtgtgaggaacatgtaggtgaaaacggcatcgaaaacaaattaatggtttgaattttatgcgcgaa 113386  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| || ||||||||| ||||| ||||    
T  113387 aacgtaaaggttgaaaatttgatgttgtc 113415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 118024 - 118249
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  118024 tgaaaattgagattttcgcttgaagactcggtgtctaaacgtttttgcaaataagtgattatgtgaggttttggaaatcgattttt---gggtggttgaa 118120  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||| | ||||||||  |||||| || ||||||||||| |||||    
T  118121 acttgaatttttctgtagattatgatagggctaagtgtgaggaacatgtaggtgaaaacgacatcgaaaacaaattaacggtatgatttttatgcgcgaa 118220  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    || ||||| ||||||||||||||| ||||    
T  118221 aatgtgaaggttgaaaatctgatgttgtc 118249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 25409 - 25505
Alignment:
Q  122 gatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatct 218  Q
    ||||||||||||  ||| ||||| | ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||    
T  25409 gatagggctaagtctcatgaacacgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtggaggttgaaaatct 25505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 94542 - 94407
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||| | |||| |||||||||||| |||| ||||| | ||||||||||||| |||||||||||||||  ||||| ||||||||    
T  94542 gttgaaacttgaattttgctgcacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacggattaaaggtttggtttttatg 94443  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     ||||||| |||||  || |||||||||||| ||||    
T  94442 cgcgaaaatgtgaaaattggaaaatctgatgttgtc 94407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 732 - 952
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||        || |||||||||    
T  732 tgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagatatcatgtgaggtttggaaatcgattttttttggatggttgaaa 831  T
Q  101 cttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||| || |||||||||||||||||||| |||||| |||||||   || ||| ||||||||| |||||||||| ||||| ||||| ||||||||  |||||    
T  832 ctttaatttttctgtagattatgatagagctaagtgtcaggagtgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcacgaaa 931  T
Q  200 acgtgaatgttgaaaatctga 220  Q
    ||||||| |||||||||||||    
T  932 acgtgaaggttgaaaatctga 952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 7589 - 7702
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    |||||||||||||||||||| |||||| |||||||   || ||| ||||||||| |||||||||| ||||| ||||| ||||||||  ||||||||||||    
T  7589 ttttctgtagattatgatagagctaagtgtcaggagtgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcacgaaaacgtgaa 7688  T
Q  207 tgttgaaaatctga 220  Q
     |||||||||||||    
T  7689 ggttgaaaatctga 7702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 26480 - 26374
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||| |||||||||| |||||||||||||||| | |||| ||||||| | || ||| ||||||||| || |||   ||||||| |||||| |||||     
T  26480 tggttgagacttgaattt-ctgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacggcatcaaaattcgattaacggtttgaattttac 26382  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  26381 gcgcgaaa 26374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 16324 - 16540
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa-tcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||        | ||||||||||||    
T  16324 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttggaaaatcgattttttt-gtgtggttgaaact 16421  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||  |||||||||||||||| ||||| |||||||| ||||||||    
T  16422 tgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggtatcgaaaacggattaacggtttggtttttatgcgcgaaaac 16521  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  16522 gtgaaggttgaaaatctga 16540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 8952262 - 8952483
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||         |||||||||||||    
T  8952262 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttta---ggtggttgaaact 8952357  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| |||||||| ||||||||    
T  8952358 tgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcgcgaaaac 8952457  T
Q  202 gtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| |||| |||||||||| ||||    
T  8952458 gtgaaggttggaaatctgatgttgtc 8952483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40726520 - 40726303
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  40726520 tgaaaactggaattttcgcttgaagattcggtgtctaaacgtttt-gcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 40726425  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || |||||||||||||||||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  40726424 acttgaatttttctatagattatgatagggctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgagcgaa 40726325  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  40726324 aacgtgaaggttgaaaatctga 40726303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 21297585 - 21297781
Alignment:
Q  9 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttgaa- 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||        ||||||||||||||| ||     
T  21297585 gggattttcgcttgaaaagtcgctgtctaaacgtttttgcaaataagtgattatgtaaggttctggaaatcga---tttttgggtggttgaaactttaat 21297681  T
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||| |||||||||||| |||||| ||||||| | || ||| ||||||| | |||||||||| ||||| |||||  ||||||| |||||||| ||||    
T  21297682 ttttctggagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacgggttaacagtttggattttatgcgcgaaaacatgaa 21297781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 21311130 - 21311324
Alignment:
Q  11 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttgaa-tt 108  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||        ||||||| ||||||| || ||    
T  21311130 gattttcacttgaaaagtcggtgtctaaaagtttttgcaaataagtgattatgtgaggttctggaaatcga---tttttgggtggtcgaaactttaattt 21311226  T
Q  109 ttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    |||||||||||||||||| |||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| |||||  ||||||| |||||||| ||||    
T  21311227 ttctgtagattatgatagagctaagtgtcaggagcgtataggcgaaaacggcatcgaaaacgggttaacggtttggattttatgcgcgaaaacatgaa 21311324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 22777291 - 22777508
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||| |||||||        ||| ||||||||||    
T  22777291 aaattgggattttcgtttgaaaaataggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggcggttgaaact 22777386  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||||||||||||||||||| | |||| |||| || | || ||| ||||||||| ||||||||||  |||| |||||| ||||||| ||||||||    
T  22777387 tgaatctttctgtagattatgatagagttaagtgtcatgagcgtgtaggcgaaaacggcatcgaaaacgggataacagtttgaattttatgcgcgaaaac 22777486  T
Q  202 gtgaatgtt-gaaaatctgatg 222  Q
    |||||  || ||||||||||||    
T  22777487 gtgaaaattagaaaatctgatg 22777508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 21109467 - 21109334
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| |||||||||| |||||| ||||| ||| ||||||||||||| |||||||||||| ||||||||||| | |||||||| ||||||| ||||||| |    
T  21109467 gggttgttgaaacttcaatttttctgtacattgtgatagggctaagtgtcaggaacatgtaggtgaaaacgacatcgaaaacagattaacggtttgatat 21109368  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgat 221  Q
    ||||| ||||||||||||| ||||||||||||||    
T  21109367 ttatgcgcgaaaacgtgaaggttgaaaatctgat 21109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 18318427 - 18318650
Alignment:
Q  3 aaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaac 101  Q
    |||||| |||||||||||| || ||||||||||||||  ||||||||||| || ||||||||||||||| ||||| |||        |||||||||||||    
T  18318427 aaaattaggattttcgcttaaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttttggaaaccgattttt---gggtggttgaaac 18318523  T
Q  102 ttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaa 200  Q
    | ||||||| |  |||||| |||||| |||||| ||||||| |  | ||| ||||||||| |||||||| | ||||| |||||||||||| | |||||||    
T  18318524 tggaatttttccttagattgtgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaacaggttaacggtttgatttttaggcgcgaaaa 18318623  T
Q  201 cgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||| | ||||||||||||| ||||    
T  18318624 cgtgaagggtgaaaatctgatgctgtc 18318650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21405851 - 21405920
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21405851 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt 21405920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20765475 - 20765699
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||| |||||| || ||||||||||||||| ||||| | |        |||||||||||    
T  20765475 tgaaaattgagattttcgcttgaagagtcggtgtctaaatgtttt-gcaaatgagtgattatgtgaggttttggaaacctattttt---gggtggttgaa 20765570  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| ||||||| ||||||||| |||||| |||||| ||||||| |  | ||| ||||||||| ||||||| || ||||| |||||||||||| | | |||    
T  20765571 actggaatttttctgtagattgtgatagagctaagtgtcaggagcgcgtaggcgaaaacggcatcgaaaaggggttaacggtttgatttttaggcgtgaa 20765670  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||   ||||||||||||| ||||    
T  20765671 aacgtgaagagtgaaaatctgatgctgtc 20765699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 22111710 - 22111577
Alignment:
Q  95 ttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatga 193  Q
    |||||||||||||||| || || |||||||||| |||||| | ||| ||||||  |||||||||||| |||||||| ||||||| | ||||||||||||     
T  22111710 ttgaaacttgaatttttctatacattatgatagtgctaagtgccagaaacatgtgggtgaaaacggcatcgaaaacagattaacggattgatttttatgt 22111611  T
Q  194 gcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||||||| ||||||||||||||| ||||    
T  22111610 gcgaaaacgtgaaggttgaaaatctgatgctgtc 22111577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 22357125 - 22357346
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaact 102  Q
    |||||||||| |||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||        ||||||||||||||    
T  22357125 aaattgggatcttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaatcga---tttttgggtggttgaaact 22357220  T
Q  103 tgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||| ||||||||||| | |||||| | |||| ||||||| | || ||| ||||||||| |||||||||  ||||| |||||  ||||| | ||||||||    
T  22357221 tgaatttttctgtagaat-tgatagagttaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgagttaacggtttggattttacgcgcgaaaac 22357319  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  22357320 gtgaaaattagaaaatctgatgttgtc 22357346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 20711644 - 20711518
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||| ||||||||||| | |||||||| ||||||| ||||||||||||||    
T  20711644 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacatgtaggtgaaaacgacatcgaaaacagattaacggtttgatttttatg 20711545  T
Q  193 agcgaaaacgtgaatgttgaaaatctg 219  Q
     | ||||| ||| | ||||||||||||    
T  20711544 cgtgaaaatgtggaggttgaaaatctg 20711518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 21204470 - 21204360
Alignment:
Q  117 attatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaat 216  Q
    |||||||||| |||||| || |||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||  | |||||||||    
T  21204470 attatgatagtgctaagtgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtagaagttgaaaat 21204371  T
Q  217 ctgatgatgtc 227  Q
    |||||| ||||    
T  21204370 ctgatgctgtc 21204360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 9730912 - 9731020
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  9730912 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcgtcgaaaacggattaacggtttgatttttat 9731011  T
Q  192 gagcgaaaa 200  Q
    | |||||||    
T  9731012 gcgcgaaaa 9731020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 21650252 - 21650138
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||| |||| |||||||||||| |||  ||||| | ||||||||||| | || ||||||||||||| |||||||||||||| ||||||||||| |    
T  21650252 ttttctgtacattaagatagggctaagtgtcgtgaacaagtaggtgaaaacgacatcaaaaacggattaacggtttgatttttatgcgcgaaaacgtgga 21650153  T
Q  207 tgttgaaaatctgat 221  Q
     ||||||||||||||    
T  21650152 ggttgaaaatctgat 21650138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 10817628 - 10817415
Alignment:
Q  13 ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttgaatttt- 110  Q
    |||||| ||||||| |||| ||||||||||||| |||||||||  ||||| ||||||| ||||||||||        ||||||||||||||||||||||     
T  10817628 ttttcgtttgaaaaatcggcgtctaaacgtttt-gcaaataagtaattatatgaggttctggaaatcgattttt---gggtggttgaaacttgaattttt 10817533  T
Q  111 ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgtt 210  Q
    || ||||||||||||| |||||| ||||||| | || ||| ||||| ||| ||||||| || ||||| |||||  ||||| | | |||||||||||  ||    
T  10817532 ctatagattatgatagagctaagtgtcaggagcgtgtaggcgaaaagggcatcgaaaatgggttaacggtttggattttacgcgtgaaaacgtgaagatt 10817433  T
Q  211 -gaaaatctgatgatgtc 227  Q
     |||||||||||| ||||    
T  10817432 agaaaatctgatgttgtc 10817415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 23539595 - 23539431
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||||| |        |||||||||||    
T  23539595 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaaatcaattttt---gggtggttgaa 23539501  T
Q  100 acttgaattt-tctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaa 168  Q
    |||||||||| ||||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||    
T  23539500 acttgaatttatctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaa 23539431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 22007197 - 22007325
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| | |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||||| ||||||||    
T  22007197 gttgaaacttgagtttttcggtagattatgatagtgctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatg 22007296  T
Q  193 agcgaaaacgtgaatgttgaaaatctgat 221  Q
     ||||||||||||| || |||||||||||    
T  22007297 cgcgaaaacgtgaaggtcgaaaatctgat 22007325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 22470656 - 22470588
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  22470656 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 22470588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 20197648 - 20197716
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggc 160  Q
    ||||||| ||||||| ||||||||||||||||||| | |||| ||||||| | || ||| |||||||||    
T  20197648 tggttgagacttgaaatttctgtagattatgatagagttaagtgtcaggagcgtgtaggcgaaaacggc 20197716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 3943 - 3721
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| ||||  |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  3943 aaattggaatttatgcttgaaaagtcggagtctgaacgtttttgcaaataagagattatgtgaggtttgggaaatcgattttg---gggtggttgaaact 3847  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| ||||||||  |||||| | |||||||||||| ||||||||    
T  3846 tgaatctttctgtagattatgatagggctaagtgtcaggaccatgtaggcgaaaacggcatcgaaaacacattaacggattgatttttatgcgcgaaaac 3747  T
Q  202 gtgaatgttgaaaatctgatgatgtc 227  Q
     |||| ||||||||||||||| ||||    
T  3746 atgaaggttgaaaatctgatgttgtc 3721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40432 - 40650
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  40432 tgaaaattgggattttcgcttgagtagtcagtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaatcgattttt---gggtggttgaa 40528  T
Q  100 acttgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    |||||||| ||| ||||||||||||||| |||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| |||||||||||||| |||||    
T  40529 acttgaatctttttgtagattatgatagagctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgtgcgaa 40628  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  40629 aacgtgaaggttgaaaatctga 40650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 25961 - 25790
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  25961 aaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagattatgtgaggtttgggaaatcga---tttttgggtggttgaaact 25865  T
Q  103 tgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaa 176  Q
    |||| |||||| |||| |||||||| |||||| ||||||| | || ||| ||||||||  |||||||||| ||||    
T  25864 tgaatttttctatagaatatgatagagctaagtgtcaggagcgtgtaggcgaaaacggtatcgaaaacgggttaa 25790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 15374158 - 15373944
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |        ||||||||||||||    
T  15374158 aaattgggattttcgtttgaatagtcggtgtctaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcaattttt---gggtggttgaaact 15374063  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| | |||||||||||| ||||||| ||||||||| || ||||||||||||| |||||||||| |||||  |||||||||||||  |||||||    
T  15374062 tgaatctttttatagattatgataaggctaagtgtcaggaacgtgtaggtgaaaacggcatcgaaaacgggttaaccatttgatttttatgtccgaaaac 15373963  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  15373962 gtgaaggttgaaaatctga 15373944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 16224206 - 16223992
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  16224206 aaattgggattttcgtttgaatagtcggtgtctaaacgttttgg-aaataagagattatgtgaggtttgggaaatcgagtttt---gggtggttgaaact 16224111  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || ||  ||||||| | |||||||||| ||||| ||||||||||||||  |||||||    
T  16224110 tgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtagacgaaaacgacatcgaaaacgggttaacggtttgatttttatgtccgaaaac 16224011  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||  |||||||||||||    
T  16224010 gtgatggttgaaaatctga 16223992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 22354508 - 22354291
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||        |||||||| ||    
T  22354508 tgaaaactggaattttcgcttgaagattcggtgtctaaacgtttt-gcaaataagtgattatgtgaggttttggaaaccgattttt---gggtggtttaa 22354413  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || |||||||||||||||||||| ||||||| | |  ||| ||||||||| |||||||||| ||||| ||||| |||||| |||||||    
T  22354412 acttgaatttttctatagattatgatagggctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttggtttttaagagcgaa 22354313  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  22354312 aacgtgaaggttgaaaatctga 22354291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14281079 - 14280854
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||| ||||| |||        |||||||||||    
T  14281079 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaaaccgattttt---gggtggttgaa 14280983  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    |||  |||||| ||||||||| |||||| |||| | ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||||||||| | |||||    
T  14280982 actgaaatttttctgtagattgtgatagagctatgtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttaggcgcgaa 14280883  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  14280882 aacgtgaagggtgaaaatctgatgctgtc 14280854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 52266205 - 52266343
Alignment:
Q  89 gggtggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttt 188  Q
    |||| |||||||||||||||||||||| |||| |||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||| ||||||||||    
T  52266205 gggttgttgaaacttgaattttctgtacattaagatagggctaagtgtcatgaacatgtaggtgaaaacgacatcgaaaacggattaacggtttgatttt 52266304  T
Q  189 tatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||| ||||||||||||| ||||||||||| ||| ||||    
T  52266305 tatgcgcgaaaacgtgaaggttgaaaatcttatgctgtc 52266343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 20898971 - 20899185
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||| |||||        ||||||||||| ||    
T  20898971 aaattgagattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagtgattgtgtgaggttttggagatcgattttt---gggtggttgaagct 20899066  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| || ||||||||||||| ||||||  ||| || | |  ||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||||    
T  20899067 tgaatttttctatagattatgatagagctaagtttcatgagcgtttaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgtgcgaaaac 20899166  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  20899167 gtgaaggttgaaaatctga 20899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6512453 - 6512273
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||        |||||||||||    
T  6512453 tgaaaattgggattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgggaaatcga---tttttgggtggttgaa 6512358  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttg 183  Q
    ||||||| |||||||||||||||||||| ||||||  |||||| |||  ||| ||||||||| |||||||||| ||||| |||||    
T  6512357 acttgaatttttctgtagattatgatagagctaagtttcaggagcatataggcgaaaacggcatcgaaaacgggttaacggtttg 6512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 15368357 - 15368146
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa-tcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||| ||||||||||||| |||||||||  |||||||||||||||| || ||||        ||||||||||||||    
T  15368357 aaattgggattttcgattgaatagtcggcgtctaaacgtttt-gcaaataagaaattatgtgaggtttggcaagtcgattttt---gggtggttgaaact 15368262  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || ||| ||||||| | |||||||||| ||||| ||||||||||||||  || ||||    
T  15368261 tgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacgggttaacggtttgatttttatgtccg-aaac 15368163  T
Q  202 gtgaatgttgaaaatct 218  Q
    ||||| |||||||||||    
T  15368162 gtgaaggttgaaaatct 15368146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54798127 - 54798352
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| || |  ||||||||||||||| ||||| |||        |||||||||||    
T  54798127 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcatatgactgattatgtgaggttttggaaaccgattttt---gggtggttgaa 54798223  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| ||||||| ||||||||| |||||| |||| | ||||||| |  | ||| ||||||||| |||||||||| ||||| ||||| |||||| | |||||    
T  54798224 actggaatttttctgtagattgtgatagagctatgtgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacggtttgttttttaggcgcgaa 54798323  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | || |||||||||| ||||    
T  54798324 aacgtgaagggtggaaatctgatgctgtc 54798352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 30233202 - 30233323
Alignment:
Q  99 aacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcga 197  Q
    |||||||||||| ||||| |||| |||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  30233202 aacttgaatttttctgtacattaagatagggctaagtgtcaagaacatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcga 30233301  T
Q  198 aaacgtgaatgttgaaaatctg 219  Q
    |||||||||  |||||||||||    
T  30233302 aaacgtgaagattgaaaatctg 30233323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4830380 - 4830604
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||||| |        |||||||||||    
T  4830380 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaaatcaattttt---gggtggttgaa 4830474  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||||| |||||    
T  4830475 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttatgcgcgaa 4830574  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  4830575 aacgtgaagattagaaaatctgatgttgtc 4830604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4833675 - 4833899
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| |||||||| |        |||||||||||    
T  4833675 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaaatcaattttt---gggtggttgaa 4833769  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||||| |||||    
T  4833770 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttatgcgcgaa 4833869  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  4833870 aacgtgaagattagaaaatctgatgttgtc 4833899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 14931362 - 14931569
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa-tcgannnnnnnngggtggttgaaacttgaatttt-ctgta 115  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||        |||||||||||||||||||||| || ||    
T  14931362 gcttgaaaagtcggagtctaaacgtttt-gcaaataagagattatgtgaggtttggaaaatcgattttt---gggtggttgaaacttgaatttttctata 14931457  T
Q  116 gattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaa 215  Q
    ||||||||||| || ||| ||||||| |  | ||| ||||||||| || ||||||| ||||| ||||| |||||| | | ||||||||||| |||| |||    
T  14931458 gattatgatagagccaagtgtcaggagcgggtaggcgaaaacggcatcaaaaacgggttaacggtttggtttttacgcgtgaaaacgtgaaggttggaaa 14931557  T
Q  216 tctgatgatgtc 227  Q
    ||||||| ||||    
T  14931558 tctgatgttgtc 14931569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 18230570 - 18230367
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||        |||||||||||    
T  18230570 tgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaattga---tttttgggtggttgaa 18230475  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| |||||||||||||| ||||| |||||| ||||||| | |  ||| ||||||| | |||||||||| |||||   |||  ||||| | |||||    
T  18230474 acttgaatttttctgtagattacgatagagctaagtgtcaggagcgtttaggcgaaaacgacatcgaaaacgggttaacgcattggattttaagtgcgaa 18230375  T
Q  199 aacgtgaa 206  Q
    ||||||||    
T  18230374 aacgtgaa 18230367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 26921778 - 26921907
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| | |||||||| |||||| |||||||||||| ||||||||||| | |||||||| ||||||| ||||||||||||||    
T  26921778 gttgaaacttgaatttttctgtacaatatgatagtgctaagtgtcaggaacatgtaggtgaaaacgacatcgaaaacagattaacggtttgatttttatg 26921877  T
Q  193 agcgaaaacgtgaatgttgaaaatctgatg 222  Q
     |||||||| || | |||||||||||||||    
T  26921878 cgcgaaaacatgtaggttgaaaatctgatg 26921907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 15371866 - 15371663
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||        |||| |||||||||    
T  15371866 aaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgggaaatcga--ttttttgggtagttgaaact 15371770  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | || |||            ||||||||| ||||| ||||||||||||||  |||||||    
T  15371769 tgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtagg------------cgaaaacgggttaacggtttgatttttatgtccgaaaac 15371682  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  15371681 gtgaaggttgaaaatctga 15371663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 15852039 - 15852178
Alignment:
Q  89 gggtggttgaaacttgaattttc-tgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| |||||||||||| ||||  |||| |||| |||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||  ||||||||    
T  15852039 gggttgttgaaacttgattttttatgtacattaagatagggctaagtgtcatgaacatgtaggtgaaaacggcatcgaaaacggattaacaatttgattt 15852138  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| || |||| ||||| ||||||||||||||| ||||    
T  15852139 ttatgcgcaaaaatgtgaaggttgaaaatctgatgctgtc 15852178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2584367 - 2584591
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| ||||||||||        |||||||||||    
T  2584367 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaaatcgattttt---gggtggttgaa 2584461  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| ||| ||| || ||||| |||||  ||||| | |||||    
T  2584462 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgtaaatgggttaacggtttggattttacgcgcgaa 2584561  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  2584562 aacgtgaaaattagaaaatctgatgttgtc 2584591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9870668 - 9870740
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9870668 tgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaagtaagggattatgtgaggtttgg 9870740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 27028491 - 27028362
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| ||||||| | |  ||| ||||||||| |||||||||| |   | |||||||||    
T  27028491 gggtggttgaaacttgaatttttctgtagattatgatagagctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaacgggt---cggtttgattt 27028395  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctga 220  Q
    ||||| ||||||||||||| |||||||||||||    
T  27028394 ttatgtgcgaaaacgtgaaggttgaaaatctga 27028362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3338201 - 3338129
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  3338201 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacattcttgcaaataagggactatgtgaggtttgg 3338129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 4615359 - 4615492
Alignment:
Q  90 ggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttt 188  Q
    |||||||||||||| |||||| |||||||||||||||| |||||| ||||||  | || ||| ||||||||| ||||| |||  ||||| ||||| ||||    
T  4615359 ggtggttgaaacttcaatttttctgtagattatgatagagctaagtgtcaggtgcgtgtaggcgaaaacggcatcgaagacgagttaacggtttggtttt 4615458  T
Q  189 tatgagcgaaaacgtgaatgttgaaaatctgatg 222  Q
    |||| ||||||||||||| |||| ||||||||||    
T  4615459 tatgcgcgaaaacgtgaaggttggaaatctgatg 4615492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13447359 - 13447135
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttg-gaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||| ||||||| |||||| ||||| ||||||| ||||||  |||||||| |||||||||||||||  ||||||||        |||||||||||    
T  13447359 tgaaaattgagattttcccttgaagagtcgatgtctaa-cgtttta-caaataagcgattatgtgaggttttagaaatcgattttt---gggtggttgaa 13447265  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| | |||| ||||||| | || ||| ||||||||| || |||| || ||||| |||||  ||||| | |||||    
T  13447264 acttgaatttttctgtagattatgatagagataagtgtcaggagcgtgtaggcgaaaacggcatcaaaaatgggttaacagtttggattttacgcgcgaa 13447165  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  13447164 aacgtgaaaattagaaaatctgatgttgtc 13447135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 7132593 - 7132704
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| ||||||||||||||| || ||| || |||| |||| ||| ||||||||  |||||||||||||||| |||||||||||||    
T  7132593 tggttgaaacatgaaatttttgtagattatgatagtgccaagtgttaggagcatgtaggcgaaaacggtatcgaaaacggattaacggtttgatttttat 7132692  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  7132693 gcgcgaaaacgt 7132704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 20000451 - 20000340
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||||||| |||| ||| |||| |||||||||| || ||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||    
T  20000451 tggttgaaacatgaaatttttgtaaattatgatagtgccaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttat 20000352  T
Q  192 gagcgaaaacgt 203  Q
    | ||||||||||    
T  20000351 gcgcgaaaacgt 20000340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 15403287 - 15403159
Alignment:
Q  89 gggtggttgaaacttgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||| ||||||| | || ||| ||||||| | ||||||||||  |||| |||||||||    
T  15403287 gggtgggtgaaacttgaatctttttgtagattatgatagggctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacgg-gtaacggtttgattt 15403189  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatct 218  Q
    |||||  || ||||||||| |||||||||||    
T  15403188 ttatgtccg-aaacgtgaaggttgaaaatct 15403159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 5683060 - 5683164
Alignment:
Q  95 ttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgag 194  Q
    ||||||| |||| ||||||||||||||||||| |||||| ||||||| | || ||| |||||||||||| ||| | ||||||| |||||| ||||||| |    
T  5683060 ttgaaacatgaaatttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcgtcaaaatccgattaacggtttgaattttatgcg 5683159  T
Q  195 cgaaa 199  Q
    |||||    
T  5683160 cgaaa 5683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 16157535 - 16157410
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| | |||||||||||||| |||| |  ||| || | || ||| ||||||||| |||||||||| ||||| ||||| ||||||||    
T  16157535 gttgaaacttgagtttttcggtagattatgatagtgctatgtctcatgagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatg 16157436  T
Q  193 agcgaaaacgtgaatgttgaaaatct 218  Q
     ||||||||||||| || ||||||||    
T  16157435 cgcgaaaacgtgaaggtcgaaaatct 16157410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 15273059 - 15273123
Alignment:
Q  163 cgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||||||||| |||||||||||||| ||||||||||  | ||||||||||||||| ||||    
T  15273059 cgaaaacggattaacggtttgatttttatgcgcgaaaacgtagaagttgaaaatctgatgttgtc 15273123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 8574316 - 8574381
Alignment:
Q  162 tcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||||| ||||| |||||||||||| | ||||||||||||| | ||||||||||||| ||||    
T  8574316 tcgaaaacgggttaacggtttgatttttaggcgcgaaaacgtgaagggtgaaaatctgatgctgtc 8574381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 54363791 - 54363891
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||||||||||| ||||| ||||||||||||| |||||| |||| || | || ||| ||||||||| || ||| |  |||||| |||||| ||||||    
T  54363791 tggttgaaacttgaaatttctatagattatgatagagctaagtgtcacgagcgtgtaggcgaaaacggcatcaaaatccaattaacggtttgaattttat 54363890  T
Q  192 g 192  Q
    |    
T  54363891 g 54363891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 15214119 - 15214226
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    |||||| |||||||| | ||||||||||||||||| || ||| ||||||| | || ||| ||||||||| || ||| | ||||||| |||||| |||||     
T  15214119 tggttgtaacttgaaatatctgtagattatgatagagccaagtgtcaggagcgtgtaggcgaaaacggcatcaaaatccgattaacggtttgaattttac 15214218  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  15214219 gcgcgaaa 15214226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15991097 - 15991026
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||   ||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  15991097 tgaaaattggaggtttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 15991026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 45314400 - 45314498
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattttta 190  Q
    ||||||| ||||||| ||||||||||||||||||| | ||||  |||||| | || ||| ||||||| | || ||| | ||||||| |||||| |||||    
T  45314400 tggttgagacttgaaatttctgtagattatgatagagttaagtatcaggatcgtgtaggcgaaaacgacatcaaaatccgattaacggtttgaatttta 45314498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 663 - 880
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||        |||||||||||    
T  663 tgaaaattgggattttcccttgaagagtcggtgtctaaacgtttt-gcaaataagcgattatgtgagattttggaaatcgattttt---gggtggttgaa 758  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| || ||||||||||||| |||||| ||||||| | |  ||| ||||||| | |||||||||| ||||| |||||||||||||| |||||    
T  759 acttgaatttttctatagattatgatagagctaagtgtcaggagcgtttaggcgaaaacgacatcgaaaacgggttaacggtttgatttttatgtgcgaa 858  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  859 aacgtgaaggttgaaaatctga 880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 25756 - 25964
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaacttgaatttt-ctgta 115  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||||||||         ||||||||||||||||||||| |||||    
T  25756 gcttgaaaagtcgaagtctaaacgtttttgcaaataagagattatgtgaggttttggaaatcgatttttt---ggtggttgaaacttgaatttttctgta 25852  T
Q  116 gattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaa 215  Q
    ||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| |||||||| ||||||||||||| |||| |||    
T  25853 gattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcgcgaaaacgtgaaggttggaaa 25952  T
Q  216 tctgatgatgtc 227  Q
    ||||||| ||||    
T  25953 tctgatgttgtc 25964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4533 - 4319
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||        |||||||||||    
T  4533 tgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagcgattatgtgaggttttggaaatcga---tttttgggtggttgaa 4438  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| |||||||||||||||||||| |||||| |||||   | |  |||  |||||||| | |||||||| ||||| |||||||||||||| |||||    
T  4437 acttgaatttttctgtagattatgatagagctaagtgtcag---cgtttaggcaaaaacggcattgaaaacgggttaacagtttgatttttatgtgcgaa 4341  T
Q  199 aacgtgaatgttgaaaatctga 220  Q
    |||||||| |||||||||||||    
T  4340 aacgtgaaggttgaaaatctga 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 35765 - 35979
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||         | |||||||||||    
T  35765 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagataatgtgaggtttgggaaatcgatattta---gatggttgaaact 35860  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||||||||||||||||||| | |||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| |||||||| ||||||||    
T  35861 tgaatatttctgtagattatgatagagataagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcgcgaaaac 35960  T
Q  202 gtgaatgttgaaaatctga 220  Q
    |||| ||||||||||||||    
T  35961 gtgattgttgaaaatctga 35979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18677 - 18463
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||| ||| |||||        |||||||||||    
T  18677 tgaaaattgggattttcgcttgaaaagtcggtgtctgaacgtttt-gcaaataagtgattgtgtgaggttttggagatcgattttt---gggtggttgaa 18582  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| || ||| |||||||   |  ||| ||||||||| ||||||| || ||||| |||||||||||||| |||||    
T  18581 acttgaatttttctgtagattatgatagagccaagtgtcaggagtgtttaggcgaaaacggcatcgaaaatgggttaacggtttgatttttatgtgcgaa 18482  T
Q  199 aacgtgaatgttgaaaatc 217  Q
    |||||||| ||||||||||    
T  18481 aacgtgaaggttgaaaatc 18463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 14470 - 14392
Alignment:
Q  143 catgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctgat 221  Q
    |||| ||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||  | ||||||||| ||||    
T  14470 catgtaggtgaaaacggcatagaaaacggattaacggtttgatttttatgcgcgaaaacgtagaagttgaaaatttgat 14392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 76932 - 76793
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||| ||||||||||||| |||||||| ||||||| |||||||||    
T  76932 gggttgttgaaacttgaatttttctgtacattatgatagggctaagtgtcaagaacatgtaggtgaaaacggcatcgaaaacagattaacggtttgattt 76833  T
Q  188 ttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| ||||||||||||| ||||||||||||||| ||||    
T  76832 ttatgcgcgaaaacgtgaaggttgaaaatctgatgttgtc 76793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 75621 - 75395
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||        |||||||||||    
T  75621 tgaaaatttggatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaaccga---tttttgggtggttgaa 75525  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||| ||||||||||||||| |||| |||||  ||||||| |  | ||| ||||||||| |||||||||| ||||| |||||  ||||| | |||||    
T  75524 acttgaatttttctgtagattattatagagctaaatgtcaggagcgcgtaggcgaaaacggcatcgaaaacgggttaacagtttggattttacgcgcgaa 75425  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  75424 aacgtgaaaattggaaaatctgatgttgtc 75395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 60254 - 60032
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| ||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  60254 aaattgggattttcgtttgaaaaatcggtgactaaacgtttt-gcaaataagagattatgtgaggtttgggaaatcgattttt---gggtggttgaaact 60159  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| ||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| ||||||   ||||||||    
T  60158 tgaatctttttgtagattatgatagtgctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttactcgcgaaaac 60059  T
Q  202 gtgaatgtt-gaaaatctgatgatgtc 227  Q
    |||||  || |||||||||||| ||||    
T  60058 gtgaaaattagaaaatctgatgttgtc 60032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 72765 - 72550
Alignment:
Q  10 ggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaaacttga--- 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||        |||||||||||||||||       
T  72765 ggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaaccga---tttttgggtggttgaaacttgattt 72669  T
Q  106 -attttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtg 204  Q
      ||||||||||||||| |||| |||||| ||||||| | || ||| ||||||||  | |||||||| ||||| |||||  ||||| | |||||||||||    
T  72668 ttttttctgtagattattatagagctaagtgtcaggagcgtgtaggcgaaaacggtattgaaaacgggttaacagtttggattttacgcgcgaaaacgtg 72569  T
Q  205 aatgtt-gaaaatctgatg 222  Q
    ||  || ||||||||||||    
T  72568 aaaattggaaaatctgatg 72550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 187612 - 187678
Alignment:
Q  153 aaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctg 219  Q
    |||||||| |||||||||||||||| ||||||||||||   |||||||||||||  | |||||||||    
T  187612 aaaacggcatcgaaaacggattaacggtttgatttttacacgcgaaaacgtgaaattggaaaatctg 187678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 3719 - 3505
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaactt 103  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||   |  | |        |||||||||||||||    
T  3719 aaattgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagtgattgtgtgaggttttata--caacgatttttgggtggttgaaactt 3623  T
Q  104 gaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacg 202  Q
    ||||||| |||||||||||||||| |||||| ||||||| | |  ||| ||||||||| ||||||| || ||||| |||||||||||||| |||||||||    
T  3622 gaatttttctgtagattatgatagagctaagtgtcaggagcgtttaggcgaaaacggcatcgaaaatgggttaacggtttgatttttatgtgcgaaaacg 3523  T
Q  203 tgaatgttgaaaatctga 220  Q
    |||| ||| |||||||||    
T  3522 tgaaggtttaaaatctga 3505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 2221 - 2443
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| ||||  |||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||| ||||| |         |||||||||||||    
T  2221 aaattggaatttatgcttgaaaagtcgaagtctaaacgtttttgaaaataagagattatgtgaggtttgggaaatcaattttta---ggtggttgaaact 2317  T
Q  103 tgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||||||| || ||||||||||||| |||||| || |||| |||| ||| ||||||||| |||||||||| ||||| ||||| |||||||| | ||||||    
T  2318 tgaatttttctatagattatgatagagctaagtgtaaggagcatgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttatgcgagaaaac 2417  T
Q  202 gtgaatgttgaaaatctgatgatgtc 227  Q
    ||||| |||| |||||||||| ||||    
T  2418 gtgaaggttggaaatctgatgttgtc 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 72487 - 72262
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| ||||| || ||||||||||| ||| ||||| |||        |||||||||||    
T  72487 tgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttacaaatgagtgattatgtgagattttggaaaccgattttt---gggtggttgaa 72391  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||  ||||||| ||||||||| |||||| |||||| ||||||| |  | ||| ||||| ||| |||||||||| ||||| |||||||||||| | |||||    
T  72390 acaggaatttttctgtagattgtgatagagctaagtgtcaggagcgcgtaggcgaaaatggcatcgaaaacgggttaacggtttgatttttaggcgcgaa 72291  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||||||||| ||||    
T  72290 aacgtgaagggtgaaaatctgatgctgtc 72262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 3706 - 3489
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||        |||| |||||||||    
T  3706 aaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatcatgtgaggtttgggaaatcgattttttttgggtagttgaaact 3608  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||||| | ||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| |||||  |||| |||||||  ||||||||    
T  3607 tgaatatttcttttgattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacgatttggtttttatacgcgaaaac 3508  T
Q  202 gtgaatgttgaaaatctga 220  Q
     |||| ||| |||| ||||    
T  3507 atgaaggttaaaaacctga 3489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 17473 - 17686
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaact 102  Q
    |||| |||||||||| ||||| ||| |||||| ||||||||| | ||||||| ||||||||||||||||| |||||||        ||||||||||||||    
T  17473 aaatagggattttcgtttgaatagttggtgtcaaaacgttttgg-aaataagagattatgtgaggtttgggaaatcgattatt---gggtggttgaaact 17568  T
Q  103 tgaat-tttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    ||||| ||| |||||||||||||||||||||  || |||| | || ||| ||||||||| |||||||||| ||||| ||||||||||||||  |||||||    
T  17569 tgaatctttttgtagattatgatagggctaat-gttaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttgatttttatgttcgaaaac 17667  T
Q  202 gtgaatgttgaaaatctga 220  Q
    ||||| |||||||||||||    
T  17668 gtgaaggttgaaaatctga 17686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 147452 - 147228
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||| ||||  | |||||||||||||||| || |||||| ||||||||| |||||||||||||| ||||||||||        |||||||||||    
T  147452 tgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaaatcgattgtt---gggtggttgaa 147358  T
Q  100 acttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| | || ||| ||||||||| |||||||||| ||||| |||||  ||||||| |||||    
T  147357 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggattttatgcgcgaa 147258  T
Q  199 aacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||||  || |||||||||||| ||||    
T  147257 aacgtgaagattagaaaatctgatgttgtc 147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 87862 - 87737
Alignment:
Q  95 ttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatga 193  Q
    |||||||||||||||| ||||| |||| |||||||||||| |||| ||||| | ||||||||||||| |||||||||||||||| ||||||||||||||     
T  87862 ttgaaacttgaatttttctgtacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgc 87763  T
Q  194 gcgaaaacgtgaatgttgaaaatctg 219  Q
    ||||||||||| | ||||||||||||    
T  87762 gcgaaaacgtggaggttgaaaatctg 87737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 7506 - 7305
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaaact 102  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  7506 aaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagattatgtgaggtttgggaaatcga---tttttgggtggttgaaact 7410  T
Q  103 tgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaac 201  Q
    |||| ||||||||||||||||||||  ||||| |||| || | || ||| ||||||||| |||||||||| ||||  |||||  ||||| |  |||||||    
T  7409 tgaatttttctgtagattatgatagatctaagtgtcaagagcgtgtaggcgaaaacggcatcgaaaacgggttaatggtttggattttacgcacgaaaac 7310  T
Q  202 gtgaa 206  Q
    |||||    
T  7309 gtgaa 7305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7105 - 6908
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttt-ggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||        || |||||||     
T  7105 tgaaaattgggattttcgtttgaaaagtcggtgtctaaacgtttttccaaataagggattatgtgaggtttgggaaaatga--ttcttgggatggttgag 7008  T
Q  100 acttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||||||| ||  ||||||||||||||| |||||| ||||||| | || ||| ||||||||| ||||||| || ||||| |||||| ||||| | ||||||    
T  7007 acttgaaattgttgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaatgggttaacggtttgaattttacgcgcgaaa 6908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 1574 - 1712
Alignment:
Q  90 ggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttt 188  Q
    |||||||||||||||| |||| | |||||||||||||| ||||||  |||||| | || ||| ||||| ||| |||||||||| ||||| |||||  |||    
T  1574 ggtggttgaaacttgagtttttcggtagattatgatagagctaagtctcaggagcgtgtaggcgaaaatggcatcgaaaacgggttaacggtttgggttt 1673  T
Q  189 tatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||| ||||||| ||||| ||||||||||||||| ||||    
T  1674 tatgcgcgaaaatgtgaaggttgaaaatctgatgttgtc 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1276 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 969 - 802
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||||| ||||||||||||  | |||||||||||| |||||||||||||| ||||||||||        |||||||||||    
T  969 tgaaaattgggattttcgcttgaaaactcggtgtctaaa--tgtttgcaaataagtgattatgtgaggttctggaaatcga---ttgttgggtggttgaa 875  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacgg 171  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| | || ||| ||||||| | ||||||||||    
T  874 acttgaatttttctgtagattatgatagagctaagtgtcaggagcgtgtaggcgaaaacgacatcgaaaacgg 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10976 - 11048
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10976 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 11048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5258 - 5330
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5258 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttacaaataagggattatgtgaggtttgg 5330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 47 - 151
Alignment:
Q  95 ttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgag 194  Q
    |||| ||||||| ||||||||||||||||||| || | | |||||||   || ||| ||||||||| || ||| | ||||||| |||||| ||||| | |    
T  47 ttgagacttgaaatttctgtagattatgatagagccatgtgtcaggagagtgtaggcgaaaacggcatcaaaatctgattaacagtttgaattttacgcg 146  T
Q  195 cgaaa 199  Q
    |||||    
T  147 cgaaa 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 5351 - 5455
Alignment:
Q  95 ttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgag 194  Q
    |||| ||||||| ||||||||||||||||||| || | | |||||||   || ||| ||||||||| || ||| | ||||||| |||||| ||||| | |    
T  5351 ttgagacttgaaatttctgtagattatgatagagccatgtgtcaggagagtgtaggcgaaaacggcatcaaaatctgattaacagtttgaattttacgcg 5450  T
Q  195 cgaaa 199  Q
    |||||    
T  5451 cgaaa 5455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 853 - 1038
Alignment:
Q  20 ttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg-aaatcgannnnnnnngggtggttgaaacttgaatttt-ctgtaga 117  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||||||||||||| |||| ||         | ||||||||||||||||||| |||||||    
T  853 ttgaaaagttggagtctaaacgtttttgcaaacaagagattatgtgaggtttgggaaatagattttta---gttggttgaaacttgaatttttctgtaga 949  T
Q  118 ttatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||| |||||| |||||||   || ||| ||||||||| |||||||||| ||||| ||||| |||||||  |||||||||||||    
T  950 ttatgatagagctaagtgtcaggagtgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttattcgcgaaaacgtgaa 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0825 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 607 - 679
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  607 tgaagattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2066 - 2138
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2066 tgaaaattgggatttttgcttgaaaagtcagtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 2138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 6690 - 6819
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||||| ||||||   |||||| |||||||||||| || |||||||| | |||||||| ||||||| ||||||||||||||    
T  6690 gttgaaacttgaatttttctgtagaatatgatgatgctaagtgtcaggaacatgtagttgaaaacgacatcgaaaacagattaacggtttgatttttatg 6789  T
Q  193 agcgaaaacgtgaatgttgaaaatctgatg 222  Q
     |||||||| |||| || ||||||||||||    
T  6790 cgcgaaaacatgaaggtagaaaatctgatg 6819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 19536 - 19405
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtt-tggaaatcgannnnnnnngggtggttgaa 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| |||        |||||||||||    
T  19536 tgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagtgattacgtaaggttatggaaaccga---tttttgggtggttgaa 19440  T
Q  100 acttgaa-ttttctgtagattatgatagggctaag 133  Q
    || |||| |||||||||||||||||||| ||||||    
T  19439 acatgaatttttctgtagattatgatagagctaag 19405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11219 - 11154
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtga 66  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  11219 tgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgaaaataagtgattatgtga 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5099 - 5034
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtga 66  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5099 tgaaaattgagattttcacatgaaaagtcggtgtctaaacgtttttgaaaataagtgattatgtga 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0597 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 1666 - 1786
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| | |   ||||||||||| |||| ||||| | ||||||||||||| |||||||||||||||| ||||||||||||||    
T  1666 gttgaaacttgaatttttctgtacactgatatagggctaagtgtcatgaacaagtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatg 1765  T
Q  193 agcgaaaacgtgaatgttgaa 213  Q
     ||||||||||||| ||||||    
T  1766 cgcgaaaacgtgaaagttgaa 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 14089 - 14209
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||  |    
T  14089 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggcgaaaacggcatcgaaaacggattaacggtttgatttttatgcgcgaaaacgtaga 14188  T
Q  207 tgttgaaaatctgatgatgtc 227  Q
     ||||||||||||||| ||||    
T  14189 agttgaaaatctgatgttgtc 14209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22106 - 22146
Alignment:
Q  163 cgaaaacggattaactgtttgatttttatgagcgaaaacgt 203  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  22106 cgaaaacggattaacggtttgatttttatgcgcgaaaacgt 22146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 35317 - 35245
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaa 76  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  35317 aaattgggattttcgcttgtaaagttggtgtctaaacgtttttgcaaataagggattatgtgaggtttcgaaa 35245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 117257 - 117033
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgagg-tttggaaatcgannnnnnnngggtggttgaa 99  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||| || |||||||||||| ||| |||| ||         |||||||||||    
T  117257 tgaaaattgggattttcgcttgaagagtcggtgtctaaatg-ttttgcaaatgagtgattatgtgaggttttagaaaccg---tattttgggtggttgaa 117162  T
Q  100 acttgaa-ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaa 198  Q
    ||| ||| ||||||||||||| |||||| |||| | ||||||| |  | ||| |||||| || ||| |||||| ||||| |||||||||||| | || ||    
T  117161 actggaatttttctgtagattgtgatagagctatgtgtcaggagcgcgtaggcgaaaacagcatcgtaaacgggttaacggtttgatttttaggcgcaaa 117062  T
Q  199 aacgtgaatgttgaaaatctgatgatgtc 227  Q
    |||||||| | ||||||| ||||| ||||    
T  117061 aacgtgaagggtgaaaatttgatgttgtc 117033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 21812 - 21741
Alignment:
Q  2 gaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  21812 gaaaattgggattttcgctcgaaaagacggtgtctaaacgttcttgcaaataagggattatgtgaggtttgg 21741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 23192 - 23305
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||| | |||| |||||||||||| |||| ||||| | ||||||||||||| |||||||||||||||| ||||| |||||| |    
T  23192 gttgaaacttgaatttttctgcacattaagatagggctaagtgtcatgaacacgtaggtgaaaacggcatcgaaaacggattaacggtttggtttttacg 23291  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  23292 cgcgaaaacgtgaa 23305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 146166 - 146031
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||||||| | || ||| ||||||||| |||||||||| ||||| ||||| |||||| |    
T  146166 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaggagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttacg 146067  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     |||||||||||||  || |||||||||||| ||||    
T  146066 cgcgaaaacgtgaaaattggaaaatctgatgttgtc 146031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 10652 - 10773
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| ||| | |||| |||||||||||| |||| ||||| | ||||||||||||| || ||||||||||||| ||||||||||||||    
T  10652 gttgaaacttgactttttctgcacattaagatagggctaagtgtcatgaacaagtaggtgaaaacggcatcaaaaacggattaacggtttgatttttatg 10751  T
Q  193 agcgaaaacgtgaatgttgaaa 214  Q
     || |||||||| | |||||||    
T  10752 cgcaaaaacgtggaggttgaaa 10773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0574 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0574
Description:

Target: scaffold0574; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 10209 - 10321
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||   |||||||||||    
T  10209 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggtgaaaacggcatcgaaaacggattaacggtttgatttttatgcaggaaaacgtgaa 10308  T
Q  207 tgttgaaaatctg 219  Q
      | |||||||||    
T  10309 attggaaaatctg 10321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 8878 - 8744
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| | |||||||||||||| |||| |  |||||| | || ||  ||||||||| |||||||||| ||||| ||||| ||||||||    
T  8878 gttgaaacttgagtttttcagtagattatgatagagctatgtctcaggagcgtgtagacgaaaacggcatcgaaaacgggttaacggtttggtttttatg 8779  T
Q  193 agcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
     ||||||||||||| || |||||||||||| ||||    
T  8778 cgcgaaaacgtgaaggtcgaaaatctgatgctgtc 8744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 6667 - 6592
Alignment:
Q  152 gaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
    ||||||||| |||||||||| ||||| ||||| |||||||| ||||||||||||| || |||||||||||| ||||    
T  6667 gaaaacggcatcgaaaacgggttaacggtttggtttttatgcgcgaaaacgtgaaggtcgaaaatctgatgctgtc 6592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 4134 - 4021
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| || | || ||| ||||||||| |||||||||| ||||| ||||| |||||| |    
T  4134 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaagagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttacg 4035  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  4034 cgcgaaaacgtgaa 4021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 8748 - 8635
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| || | || ||| ||||||||| |||||||||| ||||| ||||| |||||| |    
T  8748 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaagagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttacg 8649  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  8648 cgcgaaaacgtgaa 8635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 7665 - 7610
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  7665 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 12279 - 12224
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  12279 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 12224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 6742 - 6629
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| |||||||||||| |||| || | || ||| ||||||||| |||||||||| ||||| ||||| |||||| |    
T  6742 gttgaaacttgaatttttctgtacattaagatagggctaagtgtcaagagcgtgtaggcgaaaacggcatcgaaaacgggttaacggtttggtttttacg 6643  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  6642 cgcgaaaacgtgaa 6629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 10274 - 10219
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  10274 gcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggtttgg 10219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 6860 - 6682
Alignment:
Q  18 gcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcgannnnnnnngggtggttgaaacttgaattttctgtaga 117  Q
    |||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||        |||||| ||| ||||||| |  |||||||    
T  6860 gcttgaaaagtcggagtctaaacgtttttccaaacaagagattatgtgaggtttggaaatcga---ttttggggtggatgagacttgaaatagctgtaga 6764  T
Q  118 ttatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaa 199  Q
    ||||||||| || ||| |||||||   || ||| ||||| ||| || ||| | ||||||| |||||| ||||| | ||||||    
T  6763 ttatgatagagccaagtgtcaggagagtgtaggcgaaaatggcatcaaaatccgattaacggtttgaattttacgcgcgaaa 6682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29812 - 29741
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  29812 tgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 29741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35277 - 35206
Alignment:
Q  1 tgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  35277 tgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 35206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 687 - 822
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| ||||| |||| ||||| |||||| ||||||| | || ||| ||||||||| || ||||||||||||||||||| |||||| |    
T  687 gttgaaacttgaatttttctgtacattaagatagagctaagtgtcaggagcgtgtaggcgaaaacggcatccaaaacggattaactgtttggtttttacg 786  T
Q  193 agcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
     || ||||||| ||  || |||||||||||| ||||    
T  787 tgcaaaaacgtaaaaattggaaaatctgatgttgtc 822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 5623 - 5489
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    |||||||||||| |||| | |||||||||||||| |||| |  |||||| |||| ||  ||||||||| |||||||||| ||||| ||||| ||||||||    
T  5623 gttgaaacttgagtttttcggtagattatgatagagctatgtctcaggagcatgtagacgaaaacggcatcgaaaacgggttaacggtttggtttttatg 5524  T
Q  193 agcgaaaacgtgaatgttgaaaatctgatgatgtc 227  Q
      ||||||||||||  | |||||||||||| ||||    
T  5523 ctcgaaaacgtgaagttcgaaaatctgatgttgtc 5489  T

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Target: scaffold0342 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 5479 - 5373
Alignment:
Q  122 gatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgttg-aaaatctga 220  Q
    ||||| |||||| |||||||||||| |||  |||||||| | |||||||| ||||| ||||| |||||||| |||||||||||||  ||| |||||||||    
T  5479 gatagagctaagtgtcaggaacatgtaggcaaaaacggcattgaaaacgggttaacggtttggtttttatgcgcgaaaacgtgaaaattgaaaaatctga 5380  T
Q  221 tgatgtc 227  Q
    || ||||    
T  5379 tgttgtc 5373  T

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Target: scaffold0706 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 7240 - 7361
Alignment:
Q  107 ttttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaa 206  Q
    ||||||||  |||||||||| |||||| || |||| |||| ||||||||||| | ||||||| |||||||  ||||| |||||| | |||||||||||||    
T  7240 ttttctgtgcattatgatagtgctaagtgttaggagcatgtaggtgaaaacgacatcgaaaatggattaaaagtttggtttttacgcgcgaaaacgtgaa 7339  T
Q  207 tgtt-gaaaatctgatgatgtc 227  Q
      || |||||||||||| ||||    
T  7340 aattggaaaatctgatgttgtc 7361  T

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Target: scaffold0032 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 55148 - 55035
Alignment:
Q  94 gttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatg 192  Q
    ||||||||||||||||| || || | |  |||||||| ||| |||| ||| | | ||||||||||||| ||| |||| ||||||| ||||||||||||||    
T  55148 gttgaaacttgaatttttctttacactgagatagggccaagtgtcatgaaaacgtaggtgaaaacggcatcggaaacagattaacggtttgatttttatg 55049  T
Q  193 agcgaaaacgtgaa 206  Q
     |||||||||||||    
T  55048 cgcgaaaacgtgaa 55035  T

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Target: scaffold1957 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1957
Description:

Target: scaffold1957; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 120 - 224
Alignment:
Q  89 gggtggttgaaacttgaatttt-ctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgattt 187  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||| ||||||| | || |||  |||||| | || ||||||| ||||| |||||  ||    
T  120 gggtggttgaaacttgaatttttctgtagattatgttagagctaagtgtcaggagcgtgtaggcaaaaacgacatcaaaaacgggttaacggtttggatt 219  T
Q  188 ttatg 192  Q
    |||||    
T  220 ttatg 224  T

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Target: scaffold0125 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 28289 - 28182
Alignment:
Q  92 tggttgaaacttgaattttctgtagattatgatagggctaagagtcaggaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttat 191  Q
    ||||||| |||| || | ||||||||||||||||| | |||| ||||||| |||| ||| ||||||||| |  ||| | ||||||| |||||| ||||||    
T  28289 tggttgagactttaaatctctgtagattatgatagagttaagtgtcaggagcatgtaggcgaaaacggcattaaaatccgattaacggtttgaattttat 28190  T
Q  192 gagcgaaa 199  Q
    | ||||||    
T  28189 gcgcgaaa 28182  T

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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 52034 - 51966
Alignment:
Q  4 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 73  Q
    |||||||  |||||| |||||||||||  || |||||||||| ||||||||| |||||||||||||||||    
T  52034 aaattggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 51966  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 147091 - 147003
Alignment:
Q  140 gaacatgcaggtgaaaacggcgtcgaaaacggattaactgtttgatttttatgagcgaaaacgtgaatgtt-gaaaatctgatgatgtc 227  Q
    ||||||| ||||||||||||| |||||||||| |||||  ||||  ||||| | |||||||||||||  || |||||||||||| ||||    
T  147091 gaacatgtaggtgaaaacggcatcgaaaacgggttaacgatttggattttacgtgcgaaaacgtgaaaattggaaaatctgatgttgtc 147003  T

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