View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6671_low_2 (Length: 430)
Name: NF6671_low_2
Description: NF6671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6671_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 44461812 - 44461410
Alignment:
| Q |
10 |
acatcatcatttccaggaatagaattatcgcaggtagtaatagcagccaaagcagccttcaaccatttctgactatcaacatcagattcaaccaacaaag |
109 |
Q |
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| T |
44461812 |
acatcatcatttccaggaatagaattatcgcaggtagtaatagcagccaaagcagccttcaaccatttctgactatcaacatcagattcaaccaacaaag |
44461713 |
T |
|
| Q |
110 |
cagcaatagtgtcttcaagttgagactcagcatccaatatattttctttgcaatcagccaaaccttgttgaacttcagggtctaaattagcatcatcaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461712 |
cagcaatagtgtcttcaagttgagactcagcatccaatatattttctttgcaatcagccaaaccttgttgaacttcagggtctaaattagcatcatcaat |
44461613 |
T |
|
| Q |
210 |
cattgatttcacgtcgtttaacattgcagaagcatttctagcagcaactcttagtgctataattgccaaatcattaatgtcgtctgcgtttgcggatttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461612 |
cattgatttcacgtcgtttaacattgcagaagcatttctagcagcaactcttagtgctataattgccaaatcattaatgtcgtctgcgtttgcggatttt |
44461513 |
T |
|
| Q |
310 |
gggtcggatgacagaacttcaacacagaggtcactgtttttctgtgctagctggcatacccttgtgattaaatctttacctttggtttcttgtgcgactg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461512 |
gggtcggatgacagaacttcaacacagaggtcactgtttttctgtgctagctggcatacccttgtgattaaatctttacctttggtttcttgtgcgactg |
44461413 |
T |
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| Q |
410 |
ttt |
412 |
Q |
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| T |
44461412 |
ttt |
44461410 |
T |
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