View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6672_high_1 (Length: 746)

Name: NF6672_high_1
Description: NF6672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6672_high_1
NF6672_high_1
[»] chr1 (5 HSPs)
chr1 (1-728)||(4367390-4368117)
chr1 (5-101)||(4017592-4017688)
chr1 (5-101)||(10218126-10218222)
chr1 (5-72)||(4015774-4015841)
chr1 (5-71)||(21897356-21897422)
[»] chr7 (9 HSPs)
chr7 (5-137)||(29105856-29105988)
chr7 (5-103)||(29480368-29480466)
chr7 (5-83)||(29922934-29923012)
chr7 (5-136)||(29074123-29074253)
chr7 (5-59)||(47479667-47479721)
chr7 (6-99)||(29436502-29436595)
chr7 (5-86)||(29446534-29446615)
chr7 (6-83)||(29454982-29455059)
chr7 (6-103)||(29477246-29477343)


Alignment Details
Target: chr1 (Bit Score: 712; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Original strand, 4367390 - 4368117
Alignment:
Q  1 aggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367390 aggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccg 4367489  T
Q  101 gcgataaagccatagacgtagctgattggatattcatctcaaagcagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctgttgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367490 gcgataaagccatagacgtagctgattggatattcatctcaaagtagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctgttgca 4367589  T
Q  201 aatgtgttgtgggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtttccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367590 aatgtgttgtgggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtttccat 4367689  T
Q  301 cccatataaaattataggacaagcttacaaatcaaggcctttaaagaggtacattaactctactcttcaaaacagttcactttgacttgagattgaaaag 400  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367690 cccatataaaactataggacaagcttacaaatcaaggcctttaaagaggtacattaactctactcttcaaaacagttcactttgacttgagattgaaaag 4367789  T
Q  401 tttacccctttaaaatgtaatttggggagagaaaatagtaattgaagaggaagaaaagtatataaaaataaaaacttagtttaatgtattagattcagag 500  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367790 tttacccctttaaaatgtaatttgaggagagaaaatagtaattgaagaggaagaaaagtatataaaaataaaaacttagtttaatgtattagattcagag 4367889  T
Q  501 ctttacaataaagttgagcagttaggataatttaatagaccataggaccacatcaaagctggcttcaaaccccactggcataaagtttattaaacaataa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367890 ctttacaataaagttgagcagttaggataatttaatagaccataggaccacatcaaagctggcttcaaaccccactggcataaagtttattaaacaataa 4367989  T
Q  601 taataaatataaagagcaatcaaactcagctgttatgttagatgtattctttaattatatagttgtatccaacgtgatcaattattatggttcatattat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367990 taataaatataaagagcaatcaaactcagctgttatgttagatgtattctttaattatatagttgtatccaacgtgatcaattattatggttcatattat 4368089  T
Q  701 tttatgatattaacctgcacataccatc 728  Q
    ||||||||||||||| ||||||||||||    
T  4368090 tttatgatattaaccagcacataccatc 4368117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 4017592 - 4017688
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 101  Q
    |||||||||| ||||| |||||||| ||| | |||||| |||| ||||| |||||||||||||||||  | |||||||| || ||||||||| ||||    
T  4017592 ttttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagaggaccgccgg 4017688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 10218222 - 10218126
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg 101  Q
    |||||||||| ||||| ||||||||||| | || |||| |||| || || ||||| ||||||||||| |||| |||||| || ||||||||| ||||    
T  10218222 ttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctcggcaacgagatcttcggagaggaccgccgg 10218126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 4015774 - 4015841
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctca 72  Q
    |||||||||||||||| |||||||||||||||| |||| || | || || ||||| ||||||||||||    
T  4015774 ttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctca 4015841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 21897356 - 21897422
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctc 71  Q
    |||||||| ||||||| ||| |||||||||||| |||| || |||| || |||||||||||||||||    
T  21897356 ttttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc 21897422  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 29105988 - 29105856
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 104  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||||||| || || ||||| || || || ||||||||||| | ||| ||||||| |||    
T  29105988 ttttccaagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccaccgacga 29105889  T
Q  105 taaagccatagacgtagctgattggatattcat 137  Q
     | |||||||||| | || ||||| ||||||||    
T  29105888 cagagccatagactttgccgattgtatattcat 29105856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 29480368 - 29480466
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 103  Q
    ||||||||||||||| ||||||| ||||||||| | || |||| ||||| || || ||||||| ||| |  |||||||||||||  |||||||||||||    
T  29480368 ttttccaagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaaagtaactctgtgatgagatcatcaggaaggaccaccggcg 29480466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 29922934 - 29923012
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 83  Q
    |||||||||||||||| |||| | ||||||||||||||  ||| || || ||||| |||||||| ||||| ||||||||    
T  29922934 ttttccaagacttactaacactcttgaatcgaagaagaggtttcaccggaagaaaggaaagtacttcagcgatgagatc 29923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 29074253 - 29074123
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcga 104  Q
    ||||||||||||| |||||| |||| |||||||||||| || ||| ||| || || ||||| || || || ||||||||||| |  || ||||||| |||    
T  29074253 ttttccaagacttgctgacagacctaaatcgaagaagaaatataa-gggaaggaaggaaagaacttctgcgatgagatcatcgggaagaaccaccgacga 29074155  T
Q  105 taaagccatagacgtagctgattggatattca 136  Q
     | |||||||||| | || ||||| |||||||    
T  29074154 cagagccatagactttgccgattgtatattca 29074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 47479667 - 47479721
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaa 59  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| |||||| |||||    
T  47479667 ttttccaagacttacttacacaactgaatcgaataagaaattcaacgggaagaaa 47479721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 29436502 - 29436595
Alignment:
Q  6 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccacc 99  Q
    ||||||||||| ||||||||| || ||| ||||||   |||||||||| ||||||| ||||| ||| |  |||||||| |||| ||| ||||||    
T  29436502 tttccaagactcactgacacatctaaattgaagaatggatttaacgggaagaaacggaagtatctcggtgatgagatcgtcagggagaaccacc 29436595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 29446534 - 29446615
Alignment:
Q  5 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatc 86  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||| ||||| || || ||||  ||||| || |||||||||||    
T  29446534 ttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatcatc 29446615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 29454982 - 29455059
Alignment:
Q  6 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc 83  Q
    ||||||| ||||| | || ||||||||| ||||||||  ||| ||||| ||| | |||||||||||||| ||||||||    
T  29454982 tttccaatacttattcacgcacctgaattgaagaagaattttgacgggaagataagaaagtacctcagcgatgagatc 29455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 29477246 - 29477343
Alignment:
Q  6 tttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg 103  Q
    |||||||||||| || |||||  ||| ||||| |||| |||| ||||| || || ||||||| ||| || |||||||| ||||  |||||||||||||    
T  29477246 tttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaaggaaggaaagtaactctgcgatgagatcgtcaggaaggaccaccggcg 29477343  T

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