View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6672_high_2 (Length: 420)
Name: NF6672_high_2
Description: NF6672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6672_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 4999393 - 4998986
Alignment:
| Q |
13 |
atcatgatcaagcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaa |
112 |
Q |
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| T |
4999393 |
atcatgatcaagcaatatgttattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaa |
4999294 |
T |
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| Q |
113 |
gcaattccaaatctcttagaccaatccaactccacaaacttctcctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattc |
212 |
Q |
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| T |
4999293 |
gcaattccaaatctcttagaccaatccaactccacaaacttcccctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattc |
4999194 |
T |
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| Q |
213 |
tgaaatcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctacccaatgtttcaatctctgacttaaactcagattctgtatc |
312 |
Q |
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| T |
4999193 |
tgaaatcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctacccaatgtttcaatctctgacttaaactcagattctgtatc |
4999094 |
T |
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| Q |
313 |
aggtttatgtgttccaccaccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgatccacctcttccaatc |
412 |
Q |
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| T |
4999093 |
aggtttatgtgttccaccaccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgacccacctcttccaatc |
4998994 |
T |
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| Q |
413 |
aaattctc |
420 |
Q |
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| T |
4998993 |
aaattctc |
4998986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 4798238 - 4798359
Alignment:
| Q |
267 |
ttctacccaatgtttcaatctctgacttaaactcagattctgtatcaggtttatgtgttccac---caccccaaagctttttcactgcaactatttgacc |
363 |
Q |
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|||| ||||||||||| || ||||||| |||| ||||||||||||| |||| |||||||||| |||||| |||||||||||| ||| |||| ||||| |
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| T |
4798238 |
ttctgcccaatgtttcgatttctgactcaaacacagattctgtatcgggttgttgtgttccactaccacccctaagctttttcaccgcagctatgtgacc |
4798337 |
T |
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| Q |
364 |
tgttttcaccttcaccttataa |
385 |
Q |
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| T |
4798338 |
cgttttcaccttcactttataa |
4798359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 21468560 - 21468521
Alignment:
| Q |
53 |
tgaacaatagcaggaacacaatcatggtgtaaataagcca |
92 |
Q |
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| T |
21468560 |
tgaacaataggaggagcacaatcatggtgtaaataagcca |
21468521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 38868357 - 38868291
Alignment:
| Q |
23 |
agcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataag |
89 |
Q |
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| T |
38868357 |
agcaatatattactagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataag |
38868291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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