View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6672_high_3 (Length: 395)

Name: NF6672_high_3
Description: NF6672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6672_high_3
NF6672_high_3
[»] chr4 (12 HSPs)
chr4 (84-380)||(6132488-6132783)
chr4 (1-157)||(2891174-2891330)
chr4 (66-222)||(27498963-27499106)
chr4 (1-97)||(38270305-38270401)
chr4 (84-220)||(38270409-38270543)
chr4 (1-95)||(6132793-6132887)
chr4 (154-222)||(47564496-47564564)
chr4 (1-96)||(3937527-3937622)
chr4 (132-193)||(3937678-3937739)
chr4 (184-220)||(2891134-2891170)
chr4 (178-220)||(18537987-18538029)
chr4 (181-222)||(18535298-18535339)
[»] chr6 (25 HSPs)
chr6 (1-220)||(22490415-22490634)
chr6 (92-218)||(10583884-10584010)
chr6 (132-220)||(13056949-13057037)
chr6 (132-220)||(3632406-3632494)
chr6 (84-159)||(24338871-24338946)
chr6 (133-220)||(24338941-24339028)
chr6 (152-222)||(3630354-3630424)
chr6 (132-220)||(13039509-13039597)
chr6 (1-97)||(24338767-24338863)
chr6 (1-96)||(3630183-3630278)
chr6 (1-97)||(10584025-10584121)
chr6 (1-93)||(13039657-13039749)
chr6 (129-221)||(13870818-13870910)
chr6 (1-96)||(3632257-3632352)
chr6 (1-94)||(20220030-20220123)
chr6 (1-94)||(22114014-22114107)
chr6 (13-97)||(13870752-13870836)
chr6 (1-97)||(25477173-25477269)
chr6 (1-88)||(12161873-12161960)
chr6 (1-93)||(13057097-13057189)
chr6 (179-223)||(26944923-26944967)
chr6 (184-220)||(12162024-12162060)
chr6 (84-126)||(12161977-12162019)
chr6 (143-193)||(20219939-20219989)
chr6 (9-46)||(14466283-14466320)
[»] chr7 (14 HSPs)
chr7 (1-225)||(24748341-24748564)
chr7 (84-220)||(21677796-21677932)
chr7 (81-218)||(21679759-21679896)
chr7 (1-220)||(39146306-39146524)
chr7 (1-94)||(21679904-21679997)
chr7 (152-221)||(27833125-27833194)
chr7 (151-221)||(44724329-44724399)
chr7 (1-97)||(27832953-27833049)
chr7 (1-96)||(44724454-44724549)
chr7 (154-220)||(22829105-22829171)
chr7 (1-64)||(25276048-25276111)
chr7 (1-97)||(22828952-22829048)
chr7 (188-225)||(11355005-11355042)
chr7 (1-45)||(21677992-21678036)
[»] chr1 (19 HSPs)
chr1 (84-221)||(50248997-50249134)
chr1 (1-101)||(31489775-31489875)
chr1 (133-220)||(17323785-17323872)
chr1 (154-219)||(25251749-25251814)
chr1 (137-233)||(17186605-17186701)
chr1 (1-97)||(18839451-18839547)
chr1 (154-222)||(25248988-25249056)
chr1 (154-223)||(31489724-31489793)
chr1 (1-95)||(25251596-25251690)
chr1 (1-94)||(17186449-17186542)
chr1 (84-223)||(18839306-18839443)
chr1 (1-46)||(50248893-50248938)
chr1 (1-97)||(17323929-17324025)
chr1 (188-222)||(31423403-31423437)
chr1 (179-228)||(15669891-15669940)
chr1 (179-220)||(18801068-18801109)
chr1 (186-222)||(16430821-16430857)
chr1 (188-220)||(17352797-17352829)
chr1 (188-228)||(50308045-50308085)
[»] chr3 (27 HSPs)
chr3 (84-223)||(36011524-36011663)
chr3 (84-218)||(1627104-1627238)
chr3 (84-221)||(5927188-5927325)
chr3 (1-220)||(43423780-43424000)
chr3 (1-97)||(28137612-28137708)
chr3 (87-220)||(53468879-53469002)
chr3 (132-218)||(28102471-28102558)
chr3 (144-220)||(7754063-7754139)
chr3 (154-222)||(28137765-28137833)
chr3 (1-89)||(36011679-36011767)
chr3 (152-222)||(28100530-28100600)
chr3 (132-223)||(43421883-43421974)
chr3 (134-220)||(8183163-8183249)
chr3 (1-95)||(28100358-28100452)
chr3 (1-94)||(28102319-28102412)
chr3 (1-97)||(53468772-53468868)
chr3 (1-96)||(43421732-43421826)
chr3 (1-85)||(1627000-1627084)
chr3 (1-97)||(4663763-4663859)
chr3 (179-222)||(25635120-25635163)
chr3 (179-221)||(562207-562249)
chr3 (88-138)||(7754137-7754187)
chr3 (76-110)||(54884000-54884034)
chr3 (179-220)||(13420686-13420727)
chr3 (1-74)||(28180891-28180964)
chr3 (179-220)||(25633231-25633272)
chr3 (186-222)||(23636725-23636761)
[»] chr2 (14 HSPs)
chr2 (84-220)||(14836971-14837106)
chr2 (94-218)||(34980012-34980136)
chr2 (1-110)||(11739879-11739988)
chr2 (132-223)||(15539947-15540038)
chr2 (151-220)||(11740009-11740078)
chr2 (154-220)||(22163419-22163485)
chr2 (1-97)||(15539794-15539890)
chr2 (1-110)||(38019970-38020079)
chr2 (142-220)||(3021839-3021917)
chr2 (14-97)||(34979911-34979994)
chr2 (1-94)||(3022006-3022099)
chr2 (1-93)||(22163266-22163358)
chr2 (1-48)||(44289387-44289434)
chr2 (189-220)||(38019884-38019915)
[»] chr5 (13 HSPs)
chr5 (84-220)||(24126579-24126712)
chr5 (84-217)||(2723698-2723823)
chr5 (84-193)||(10474746-10474856)
chr5 (84-203)||(17072619-17072739)
chr5 (1-97)||(24126720-24126816)
chr5 (154-220)||(695631-695697)
chr5 (1-97)||(10474642-10474738)
chr5 (1-222)||(20044755-20044970)
chr5 (1-96)||(39398311-39398405)
chr5 (1-97)||(17072747-17072843)
chr5 (132-220)||(20042770-20042858)
chr5 (1-95)||(2723833-2723927)
chr5 (1-97)||(20042914-20043010)
[»] chr8 (9 HSPs)
chr8 (84-223)||(27107320-27107458)
chr8 (84-220)||(26774978-26775114)
chr8 (1-93)||(33541707-33541799)
chr8 (1-97)||(14477196-14477292)
chr8 (1-93)||(27107216-27107308)
chr8 (154-221)||(33541860-33541927)
chr8 (1-220)||(15186029-15186247)
chr8 (1-97)||(25952441-25952537)
chr8 (9-73)||(5372504-5372568)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 84 - 380
Target Start/End: Complemental strand, 6132783 - 6132488
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||    
T  6132783 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtaccctgaaaatcagccaccgattttcagcttccaga 6132684  T
Q  184 attccaatttcttcaattttgaggcactttcacaacaattataaagaaaaccttccttnnnnnnnnngtacaaagaaaacttgcatttcaaaccgtggca 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||    
T  6132683 attccaatttcttcaattttgaggcactttcacaacaattataaagaaagccttcctt-aaaaaaaagtacaaagaaaacttgcatttcaaaccgtggca 6132585  T
Q  284 ttaattgtaccatcgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaataaaagagccacttattat 380  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6132584 ttaattgtaccattgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaaaaaaagagccacttattat 6132488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 2891330 - 2891174
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| |||  | || ||||| | ||||||||| |||||||||||||||||||||||||    
T  2891330 tatatttatagtaaaagaatcctcaataaaactggaacaaatctagtcccataaatacgtttctgttttattttctgctgtcaaaatcggccaccgattt 2891231  T
Q  101 ttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaa 157  Q
    ||||||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||    
T  2891230 ttgccgaacctgaagctcaaataaaataggtcaaaatcggccaccgtgccctgaaaa 2891174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 27499106 - 27498963
Alignment:
Q  66 ttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccac 165  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||| ||||||            
T  27499106 ttttattttctgctgtcaaaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccctgccctgaaaa-------- 27499015  T
Q  166 caattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
         |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27499014 -----ttcagcttccagaattccaatttcttcaattttgaggcactttcacaacaat 27498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38270305 - 38270401
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||||||    
T  38270305 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 38270401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 38270409 - 38270543
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||| |||||||||||||||| || || |||| ||||||   |||||||||  | ||||| ||||||||| |||||| |||||| |||  ||||    
T  38270409 aaatcggccatcgatttttgccgaaccaaaggc-caaa-aaaacagtccaaaatcggctatcgtgctttgaaaatcggccaccgattttctgctaccaga 38270506  T
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||| |||||||||||||||||||||||||||||||||    
T  38270507 atttcaatttcttcaattttgaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6132887 - 6132793
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccacc 95  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| |   || || ||||||| ||||||||||||||||||||||||||||||    
T  6132887 tatatttatagtaaaagaatcctcaataaaactagaacaaatctaggcatgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc 6132793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 47564564 - 47564496
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47564564 aaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaat 47564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3937527 - 3937622
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| ||||||||||||||| ||||| ||| ||| |||||||| ||| || || ||||| | ||||||||  |||||||||||||||||||||    
T  3937527 tatatttatagtaaaagaatcctaaataaaactggaaaaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccaccg 3937622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 3937678 - 3937739
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 193  Q
    ||||||||| ||||| ||| |||||||| |||||| |||||| |||||||||||||||||||    
T  3937678 caaaatcggccaccgagccctgaaaatcggccaccgattttctgctttcagaattccaattt 3937739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 2891170 - 2891134
Alignment:
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  2891170 attccaatttcttcaattttgaggcactttcacaaca 2891134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 18537987 - 18538029
Alignment:
Q  178 ttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  18537987 ttcagaacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 18535298 - 18535339
Alignment:
Q  181 agaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  18535298 agaactccaatttcttcaatattgagtcactttcacaacaat 18535339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 22490634 - 22490415
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| | ||||||||||||||||||| ||| |||||||||||||||| || || ||||| | ||||||||| |||| |||||||| |||||||||||    
T  22490634 tatatttatggtaaaagaatcctcaataaaactggaacaaatctagacccgaaaatacgtttctgttttattttctgctatcaaaatcagccaccgattt 22490535  T
Q  101 ttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaat 200  Q
     |||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||| | |||||||||||||||||||| ||||||||||||    
T  22490534 atgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccatcgattttcagctttcagaattctaatttcttcaat 22490435  T
Q  201 tttgaggcactttcacaaca 220  Q
    ||||||||||||||| ||||    
T  22490434 tttgaggcactttcataaca 22490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 10584010 - 10583884
Alignment:
Q  92 caccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaat 191  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||||   |||||  |||||||||| ||||||||||||    
T  10584010 caccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgcgccctgaaaatggaccaccggttttcagcttccagaattccaat 10583911  T
Q  192 ttcttcaattttgaggcactttcacaa 218  Q
    |||||||||||| ||||||||||||||    
T  10583910 ttcttcaattttaaggcactttcacaa 10583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 13057037 - 13056949
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||| ||||| ||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  13057037 caaaatcggccaccgagccctgaaaatcggccaccaattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 3632406 - 3632494
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||| |||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3632406 caaaatcggccaccgtgctttgaaaatcgggcatcgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 24338871 - 24338946
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatc 159  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  24338871 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatc 24338946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 24338941 - 24339028
Alignment:
Q  133 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  24338941 aaaatcggcctccgtgccctgaaaatcggccaccgattttcatcttccagaatttcaatttcttcaattttgaggcactttcacaaca 24339028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 3630354 - 3630424
Alignment:
Q  152 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3630354 tgaaaatcggccaccgattttcagcttctagaattccaatttcttcaattttgaggcactttcacaacaat 3630424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 13039597 - 13039509
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||| ||||| ||| |||||||| ||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  13039597 caaaatcggccaccgagccctgaaaatcggccaccggttttctgcttccagaatttcaatttcttcaattttgaggcactttcacaaca 13039509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24338767 - 24338863
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||| ||||||| ||| |||||||||||| ||| || || ||||||| ||||||||| || |||||||||||||||||||    
T  24338767 tatatttatagtaaaagaatcttcaataaaactggaacaaatctaggcccgaaaatacgtttatgttttattttttggtgtcaaaatcggccaccga 24338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3630183 - 3630278
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| |||||||||||||| ||||||    
T  3630183 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccaaaaatacgtttctgttttattttctgctgtcaaaatcgaccaccg 3630278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10584121 - 10584025
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || ||  |||  | ||||||||| ||||||||||||||||||||||    
T  10584121 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatatgttactgttttattttctgctgtcaaaatcggccaccga 10584025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13039749 - 13039657
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggcca 93  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||  || || || ||||||| ||||||||| || |||||||||||||||    
T  13039749 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggtccgaaaatacgtttatgttttattttctgttgtcaaaatcggcca 13039657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 13870818 - 13870910
Alignment:
Q  129 tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 221  Q
    |||||||||||| |||||  || ||||||||  ||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||    
T  13870818 tgtcaaaatcggccaccgaaccctgaaaatcgaccaccgattttctgcttccaaaattccaatttcttcaattttaaggcactttcacaacaa 13870910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3632257 - 3632352
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| ||||||| ||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||| |||||    
T  3632257 tatatttatagtaaacgaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggtcaccg 3632352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 20220123 - 20220030
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| || ||  |||| | ||||||||| |||||||||||||||||||    
T  20220123 tatatttatagtaaaggaatcatcaataaaactggaacaaatctagacccgaaaatatgtttttgttttattttctgctgtcaaaatcggccac 20220030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 22114107 - 22114014
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| || ||  |||| | ||||||||| |||||||||||||||||||    
T  22114107 tatatttatagtaaaggaatcatcaataaaactggaacaaatctagacccgaaaatatgtttttgttttattttctgctgtcaaaatcggccac 22114014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 13870752 - 13870836
Alignment:
Q  13 aaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||  ||||||||||||||||||||||    
T  13870752 aaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctattttatttcctgctgtcaaaatcggccaccga 13870836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 25477269 - 25477173
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    |||||||  |||||||||||||||||||| ||| |||||||||||| ||| || ||  |||| | ||||||||| || |||||||||||||||||||    
T  25477269 tatatttacagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatatgtttctgttttattttctgatgtcaaaatcggccaccga 25477173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12161873 - 12161960
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatc 88  Q
    |||||||  |||||||||||||||||||| ||| |||||||||||| ||| || ||  |||| | ||||||||| |||||||||||||    
T  12161873 tatatttaaagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatatgtttctgttttattttctgctgtcaaaatc 12161960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13057189 - 13057097
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggcca 93  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| ||| || || ||||| | ||||||||| | || ||||||| |||||    
T  13057189 tatatttatagtaaaagaatcctcaataaaattggaacaaatctaggcccgaaaatacgtttctgttttattttctactatcaaaattggcca 13057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 26944967 - 26944923
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  26944967 tcagaactccaatttcttcaattttgagtcactttcacaacaatt 26944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 12162024 - 12162060
Alignment:
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12162024 attccaatttctttaattttgaggcactttcacaaca 12162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 12161977 - 12162019
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaa 126  Q
    |||| |||||||||||||||||||| || ||||||||||||||    
T  12161977 aaattggccaccgatttttgccgaatctgaagctcaaataaaa 12162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 20219989 - 20219939
Alignment:
Q  143 accgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 193  Q
    |||||||| |||||||| |||||| ||||||||||| || |||||||||||    
T  20219989 accgtgccctgaaaatcggccaccgattttcagcttccataattccaattt 20219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 14466320 - 14466283
Alignment:
Q  9 tagtaaaagaatcctcaataatactcgaacaaatctag 46  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  14466320 tagtaaaagaatcctcaataaaactggaacaaatctag 14466283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 24748564 - 24748341
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| || |||||||||| ||||||| ||| ||||||||||||  || || || ||||| | ||||||||| |||||||||||| |||||||||| |    
T  24748564 tatatttataataaaagaatc-tcaataaaactggaacaaatctagggccgaaaatacgtttctgttttattttctgctgtcaaaattggccaccgatct 24748466  T
Q  101 ttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaat 200  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||| ||||||    
T  24748465 ttgccgaacctgaagctcaaataaaacaggtcaaaatcggtcaccgtgccctgaaaatcagccaccgattttcagcttccagaattctaattttttcaat 24748366  T
Q  201 tttgaggcactttcacaacaattat 225  Q
    |||||| ||||||||||||| ||||    
T  24748365 tttgagtcactttcacaacatttat 24748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 21677932 - 21677796
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| || |||||| | ||| ||||| |||||||| |||||| ||||||||||| |||     
T  21677932 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggttaaaatcagccactgtgccctgaaaatcggccaccgattttcagcttccagg 21677833  T
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  21677832 attccaatttcttcaattttgaggcactttcacaaca 21677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 21679896 - 21679759
Alignment:
Q  81 tcaaaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttc 180  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| |||| |||| |  ||||| |||||| || |||||||| |    
T  21679896 tcaaaatcggccaccaattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccatgccctacaaatcggccaccgatgttcagcttcc 21679797  T
Q  181 agaattccaatttcttcaattttgaggcactttcacaa 218  Q
    |||||||||||||||| | |||||||||||||||||||    
T  21679796 agaattccaatttcttaatttttgaggcactttcacaa 21679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39146306 - 39146524
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||||||||||||||| | | ||||||||||||  |  || || ||||| | ||||||||| ||||||||||||||||||||| |||    
T  39146306 tatatttatagtaaaagaatcctcaataaaattggaacaaatctaggtctgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccgtttt 39146405  T
Q  101 ttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaat 200  Q
    ||||| |||| | ||   ||| | |||| ||||||||||| |||||  || ||||||||  |||||  ||||| |||| || ||||||||||||||||||    
T  39146406 ttgccaaaccaacagacaaaaaacaaca-gtcaaaatcggccaccgaaccctgaaaatcgaccaccggttttctgcttccaaaattccaatttcttcaat 39146504  T
Q  201 tttgaggcactttcacaaca 220  Q
    |||||| |||||||||||||    
T  39146505 tttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21679997 - 21679904
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||| ||| || || ||||| | ||||||||| |||||||||||||||||||    
T  21679997 tatatttatagtaaaagaatcctcaattaaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggccac 21679904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 27833125 - 27833194
Alignment:
Q  152 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 221  Q
    |||||||| |||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  27833125 tgaaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaa 27833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 44724399 - 44724329
Alignment:
Q  151 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 221  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||    
T  44724399 ttgaaaatcggccaccgattttcagcttccagaatttcaattttttcaattttgaggcacgttcacaacaa 44724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27832953 - 27833049
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||| ||||||| ||| |||||||||||| ||| || || | ||| | ||||||||| |||||||||||| |||||||||    
T  27832953 tatatttatagtaaaagaatcatcaataaaactggaacaaatctaggcccgaaaatacatttctgttttattttctgctgtcaaaattggccaccga 27833049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 44724549 - 44724454
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||  || || || ||||| | ||||||||| |||| |||||||| |||||||    
T  44724549 tatatttatagtaaaagaatcctcaataaaactagaacaaatctaggtccgaaaatacgtttctgttttattttctgctatcaaaatcagccaccg 44724454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 22829105 - 22829171
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| |||||  ||||||  ||| ||||||||||||||||||||||||||| |||||||||||||    
T  22829105 aaaatcggccactgattttctacttccagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25276111 - 25276048
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttat 64  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || |||||||    
T  25276111 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttat 25276048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 22828952 - 22829048
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||| ||||   |||| ||| |||||||||||| ||| || || ||||| | ||||||||  |||||| |||||||||||||||    
T  22828952 tatatttatagtaaaagtatccctcataaaactggaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgttaaaatcggccaccga 22829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 11355042 - 11355005
Alignment:
Q  188 caatttcttcaattttgaggcactttcacaacaattat 225  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  11355042 caatttcttcaattttgagtcactttcacaacagttat 11355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21678036 - 21677992
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatcta 45  Q
    ||||||| ||||||||||||||||||||| |||  ||||||||||    
T  21678036 tatatttatagtaaaagaatcctcaataaaactgaaacaaatcta 21677992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 50248997 - 50249134
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||  || ||||||||||| ||||    
T  50248997 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcagcggccgattttcagcttccaga 50249096  T
Q  184 attccaatttcttcaattttgaggcactttcacaacaa 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50249097 attccaatttcttcaattttgaggcactttcacaacaa 50249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31489875 - 31489775
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||| || ||||    
T  31489875 tatatttatagtaaaagaatcctcaataaaactagaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggcccccaattt 31489776  T
Q  101 t 101  Q
    |    
T  31489775 t 31489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 17323872 - 17323785
Alignment:
Q  133 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||||| ||||| ||| |||||||| | |||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  17323872 aaaatcggccaccgagccctgaaaatcggtcaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 25251749 - 25251814
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaac 219  Q
    |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25251749 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 17186605 - 17186701
Alignment:
Q  137 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaattataaagaaaa 233  Q
    |||| ||||| ||| ||||||||||||||| |||||| |||| |||| || ||||||||||||||||||| | |||||||||||| ||| |||||||    
T  17186605 tcggccaccgagccctgaaaatcagccaccgattttctgcttccagattttcaatttcttcaattttgagtcgctttcacaacaaatatgaagaaaa 17186701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 18839547 - 18839451
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| |||  ||||||||||| ||| || || ||||| | ||| ||||| ||||||||||||||||||||||    
T  18839547 tatatttatagtaaaagaatcctcaataaaactataacaaatctaggcccgaaaatacgtttctgtttaattttctgctgtcaaaatcggccaccga 18839451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 25248988 - 25249056
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25248988 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactatcacaacaat 25249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 31489793 - 31489724
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  31489793 aaaatcggcccccaattttctgcttccagaattccaatttcttcaattttaaggcactttcgcaacaatt 31489724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25251596 - 25251690
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccacc 95  Q
    ||||||| |||||||| |||| ||||||| ||| |||||||||||| ||| || || ||||| |||||||| || |||||| |||||||||||||    
T  25251596 tatatttatagtaaaaaaatcttcaataaaactggaacaaatctaggcccgaaaatacgtttcttttttatattctgctgttaaaatcggccacc 25251690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17186449 - 17186542
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| || |||||||||||||||||| ||| |||||||| |||  || || || ||||| ||||||||||  |||||||||||||||||||    
T  17186449 tatatttatattaaaagaatcctcaataaaactggaacaaatttaggtccaaaaatacgtttcttttttatttcctgctgtcaaaatcggccac 17186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 18839443 - 18839306
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    ||||||||||||||||||||||||||| | ||  |||| || | |   ||||||||| ||||||||  ||||| || |||| | |||||| | |  ||||    
T  18839443 aaatcggccaccgatttttgccgaaccaacagg-caaaaaacagagtccaaaatcggccaccgtgctctgaaa-tcggccatcgattttctgttaccaga 18839346  T
Q  184 attccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  18839345 attccaatttattcaattttgaggcactttcacaataatt 18839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50248893 - 50248938
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctag 46  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  50248893 tatatttatagtaaaagaatcctcaataaaactggaacaaatctag 50248938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17324025 - 17323929
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| || |||||||||||||||||| ||| |||||||| ||| | | ||  | ||||| | ||||| ||| |||||||||||| |||||||||    
T  17324025 tatatttataataaaagaatcctcaataaaactggaacaaatttaggcacgaaagtacgtttctgttttaatttctgctgtcaaaattggccaccga 17323929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 31423403 - 31423437
Alignment:
Q  188 caatttcttcaattttgaggcactttcacaacaat 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaacaat 31423437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 15669891 - 15669940
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaacaattataaa 228  Q
    |||||| |||||||||||||||||| ||  |||||||||||| |||||||    
T  15669891 tcagaactccaatttcttcaattttaagttactttcacaacatttataaa 15669940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 18801068 - 18801109
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| ||||||| ||||||||||||| |||||||||||||    
T  18801068 tcagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 16430857 - 16430821
Alignment:
Q  186 tccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||||| |||||||||||| |||||||||||||||    
T  16430857 tccaatttattcaattttgagtcactttcacaacaat 16430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  188 caatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||||||||||||| |||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 50308045 - 50308085
Alignment:
Q  188 caatttcttcaattttgaggcactttcacaacaattataaa 228  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  50308045 caatttctccaattttgagtcactttcacaacaatgataaa 50308085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 36011663 - 36011524
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||  |||||| ||||||| ||| ||||    
T  36011663 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccttgaaaattggccaccgattttcaccttccaga 36011564  T
Q  184 attccaatttcttcaattttgaggcactttcacaacaatt 223  Q
     |||||||||||||||||||||||||||||||||||||||    
T  36011563 tttccaatttcttcaattttgaggcactttcacaacaatt 36011524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 1627104 - 1627238
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| | |||||||| |||||| ||||||||||| ||||    
T  1627104 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgtgtcctgaaaatcggccaccgattttcagcttccaga 1627203  T
Q  184 attccaatttcttcaattttgaggcactttcacaa 218  Q
    |||||||||||||||||||||||||||||||||||    
T  1627204 attccaatttcttcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 5927188 - 5927325
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||||||||| ||||   || ||||||  |||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||| || |    
T  5927188 aaatcggccatcgataaatgtcgaaccagaagctcaaataaaacaggtcaaaatcggccaccgtgctctgaaaatcagccaccgattttcagcttccaaa 5927287  T
Q  184 attccaatttcttcaattttgaggcactttcacaacaa 221  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5927288 attccaatttcttcaattttaaggcactttcacaacaa 5927325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43423780 - 43424000
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccc-taacatgcgtttattttttattttatgctgtc-aaaatcggccaccgat 98  Q
    ||||||| |||||||||| |||||||||| ||| |||||||||||| |||  || || ||||| | ||||||||| ||||||| ||||||||||||||||    
T  43423780 tatatttatagtaaaagagtcctcaataaaactggaacaaatctaggcccaaaaaatacgtttctattttattttttgctgtcaaaaatcggccaccgat 43423879  T
Q  99 ttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttca 198  Q
    |||||||||| ||||    |||| || | |   ||||||||| |||||||   || | ||| ||||||  |||||  ||  |||||||||||||||||||    
T  43423880 ttttgccgaa-ctaacaaacaaaaaacagagtccaaaatcggccaccgtggtctggatatcggccaccggttttctactaccagaattccaatttcttca 43423978  T
Q  199 attttgaggcactttcacaaca 220  Q
    ||||||||||||||||||||||    
T  43423979 attttgaggcactttcacaaca 43424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28137612 - 28137708
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||||||    
T  28137612 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 28137708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 53468879 - 53469002
Alignment:
Q  87 tcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaatt 186  Q
    |||||||||| |||||||||||||| ||||||||||||||   ||||||||||| ||||||||| |||||||| ||          ||||||  ||||||    
T  53468879 tcggccaccggtttttgccgaacctgaagctcaaataaaaatggtcaaaatcggccaccgtgccctgaaaatcggc----------cagcttatagaatt 53468968  T
Q  187 ccaatttcttcaattttgaggcactttcacaaca 220  Q
    | ||||||||||||||||||||||||||||||||    
T  53468969 ctaatttcttcaattttgaggcactttcacaaca 53469002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 28102471 - 28102558
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattcc-aatttcttcaattttgaggcactttcacaa 218  Q
    ||||||||| |||||  ||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  28102471 caaaatcggccaccgaaccttgaaaatcagcccccgattttctgctttcagaattccaaatttattcaattttgaggcactttcacaa 28102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 7754139 - 7754063
Alignment:
Q  144 ccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||| |||||||| |||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7754139 ccgtgccctgaaaatcggccagcgatttttagcttccagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 28137765 - 28137833
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||| |||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28137765 aaaatcggccaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36011767 - 36011679
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcg 89  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | |||||||||||| |||||||||||    
T  36011767 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttatgttgtcaaaatcg 36011679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 28100530 - 28100600
Alignment:
Q  152 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||||| |||| | ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28100530 tgaaaatcggccatcgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 43421883 - 43421974
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    ||||||||| ||||||   ||||||||| ||||   |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  43421883 caaaatcggccaccgtagtttgaaaatcggccatttattttctgctacctgaattccaatttcttcaattttgaggcactttcacaacaatt 43421974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 8183163 - 8183249
Alignment:
Q  134 aaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||| ||||||||  ||||||||   |||  |||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  8183163 aaatcggccaccgtgctctgaaaatcgatcactgattttctgctatcagaatttcaatttcttcaattttgaggcactttcacaaca 8183249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 28100358 - 28100452
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccacc 95  Q
    ||||||| |||||||||||||||| |||| ||| ||||||||| || ||| || || ||||  | ||||||||| ||||||||||||||||||||    
T  28100358 tatatttatagtaaaagaatcctctataaaactggaacaaatccaggcccgaaaatacgttagtgttttattttctgctgtcaaaatcggccacc 28100452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28102319 - 28102412
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| |||||||||||||||| |||| ||| ||||||||| || ||| || || ||||  | ||||||||| |||||||||||||||||||    
T  28102319 tatatttatagtaaaagaatcctctataaaactggaacaaatccaggcccgaaaatacgttagtgttttattttctgctgtcaaaatcggccac 28102412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 53468772 - 53468868
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| ||| || ||  |||| | ||||||||| || ||| |||||||||||||||    
T  53468772 tatatttatagtaaaagaatcctcaataaaaatggaacaaatctaggcccgaaaatatgtttctgttttattttctgttgttaaaatcggccaccga 53468868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 43421732 - 43421826
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| |||||||| | |||||||||| ||| |||||||||||| ||| || || ||||  | ||||||||| |||||||||||||||||||||    
T  43421732 tatatttatagtaaaaaagtcctcaataaaactggaacaaatctaggcccaaaaatacgttc-tattttattttctgctgtcaaaatcggccaccg 43421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1627000 - 1627084
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaa 85  Q
    ||||||| ||||||||||||| ||||||| ||| |||||||||||| | | || || ||||| | ||||||||| ||||||||||    
T  1627000 tatatttatagtaaaagaatcatcaataaaactggaacaaatctaggctcgaaaatacgtttctgttttattttttgctgtcaaa 1627084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4663859 - 4663763
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||| ||||||| ||| |||||||||||  ||  || || ||||| | ||||||||| | |||| |||||||||||||||    
T  4663859 tatatttatagtaaaagaatcttcaataaaactagaacaaatctaagcctgaaaatacgtttctgttttattttctactgtaaaaatcggccaccga 4663763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 25635163 - 25635120
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  25635163 tcagaactccaatttcttcaattttgagtcactttcacaacaat 25635120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 562207 - 562249
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaacaa 221  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  562207 tcagaactccaatttcttcaattttgagtcactttcacaacaa 562249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 7754137 - 7754187
Alignment:
Q  88 cggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatc 138  Q
    |||||| ||||||||||||||| | |||||||||||||||| |||||||||    
T  7754137 cggccatcgatttttgccgaacttgaagctcaaataaaacaggtcaaaatc 7754187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 54884034 - 54884000
Alignment:
Q  76 tgctgtcaaaatcggccaccgatttttgccgaacc 110  Q
    |||||||||||||||||||||||||||||||||||    
T  54884034 tgctgtcaaaatcggccaccgatttttgccgaacc 54884000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 13420686 - 13420727
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  13420686 tcagaactccaatttcttcaattttgagtcactttcacaaca 13420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28180964 - 28180891
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttatttt 74  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||| || ||| || || ||||| | |||||||||    
T  28180964 tatatttatagtaaaagaatcctcaataaaactggaacaaatcgaggcccgaaaatacgtttctattttatttt 28180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 25633272 - 25633231
Alignment:
Q  179 tcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  25633272 tcagaactccaatttcttcaattttgaatcactttcacaaca 25633231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 23636761 - 23636725
Alignment:
Q  186 tccaatttcttcaattttgaggcactttcacaacaat 222  Q
    |||||||||| |||||||||| |||||||||||||||    
T  23636761 tccaatttctccaattttgagtcactttcacaacaat 23636725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 14837106 - 14836971
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||| ||||    
T  14837106 aaatcggccgccgatttttgccgaacctgaagctcaaataaaacatgtcaaaatcggccaccgtgccctgaaaa-cggccaccaattttcagcttccaga 14837008  T
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14837007 attctaatttcttcaattttgaggcactttcacaaca 14836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 34980012 - 34980136
Alignment:
Q  94 ccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 193  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| ||||||| | | |||||| |||||| |||||||||||  ||||||| |||||    
T  34980012 ccgatttttgccaaacctaaagctcaaataaagcaggtcaaaatcggccaccgtgtcctaaaaatcggccaccgattttcagcttctagaattctaattt 34980111  T
Q  194 cttcaattttgaggcactttcacaa 218  Q
    |||||||||||||||| ||||||||    
T  34980112 cttcaattttgaggcattttcacaa 34980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11739879 - 11739988
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||| | || || ||||| | ||||||||| |||||||||||||||||||||||||    
T  11739879 tatatttatagtaaaagaatcctcaataaaactggaacaaatctagacacgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccgattt 11739978  T
Q  101 ttgccgaacc 110  Q
    ||||||||||    
T  11739979 ttgccgaacc 11739988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 15539947 - 15540038
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    ||||||||| ||||| |||||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15539947 caaaatcggccaccgagccttgaaaatcggccatcgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaacaatt 15540038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 11740009 - 11740078
Alignment:
Q  151 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11740009 ttgaaaatcggccaccgattttcaactttcagaattccaatttcttcaattttgaggcactttcacaaca 11740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 22163419 - 22163485
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22163419 aaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 15539794 - 15539890
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| |||||||| |||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||||||    
T  15539794 tatatttatagtaaaacaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 15539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38020079 - 38019970
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| |||||||| |||||||||||| ||| ||| |||||||| ||| || || ||||| | ||||||||| | ||||||||||||||||| |||||    
T  38020079 tatatttatagtaaaaaaatcctcaataaaactggaataaatctaggcccgaaaatacgtttctgttttattttctactgtcaaaatcggccactgattt 38019980  T
Q  101 ttgccgaacc 110  Q
    |||| |||||    
T  38019979 ttgctgaacc 38019970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 3021917 - 3021839
Alignment:
Q  142 caccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||| ||| |||||||| |||||  |||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  3021917 caccgagccctgaaaatcggccacggatttcctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 3021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 34979911 - 34979994
Alignment:
Q  14 aaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    |||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| |||||| |||||||||||||||    
T  34979911 aaagaatcctcaataaaactggaacaaatctaggcccgaagatacgtttctgttttattttctgctgtgaaaatcggccaccga 34979994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3022099 - 3022006
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccac 94  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||| ||| || || ||||| | ||||||||  |||| ||||||||||||||    
T  3022099 tatatttatagtaagagaatcctcaataaaactccaacaaatctaggcccgaaaatacgtttctgttttatttcctgctatcaaaatcggccac 3022006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22163266 - 22163358
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggcca 93  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || | ||| | ||||||||  |||||||||||| |||||    
T  22163266 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacatttctgttttatttcctgctgtcaaaattggcca 22163358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44289387 - 44289434
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagac 48  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  44289387 tatatttatagtaaaagaatcctcaataaaactggaacaaatctagac 44289434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 38019915 - 38019884
Alignment:
Q  189 aatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||||||||||||||||||||||||||    
T  38019915 aatttcttcaattttgaggcactttcacaaca 38019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 24126712 - 24126579
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    ||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||||   || || | ||||||||||||||||||  |||    
T  24126712 aaatcggccaccgatttttgccgaatctgaagctcaaacaaaacaggtcaaaatcggccaccgtgc---gacaaccggccaccaattttcagcttctaga 24126616  T
Q  184 attccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24126615 attccaatttcttcaattttgagacactttcacaaca 24126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 2723823 - 2723698
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 183  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||        ||| ||||||||||| ||||    
T  2723823 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaa--------accgattttcagcttccaga 2723732  T
Q  184 attccaatttcttcaattttgaggcactttcaca 217  Q
    ||||||||||||||||||||||||||||||||||    
T  2723731 attccaatttcttcaattttgaggcactttcaca 2723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 10474746 - 10474856
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaa-ttttcagctttcag 182  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||| |||    
T  10474746 aaatcggccaccgattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccaccaatttttcagcttccag 10474845  T
Q  183 aattccaattt 193  Q
    |||||||||||    
T  10474846 aattccaattt 10474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 17072739 - 17072619
Alignment:
Q  84 aaatcggccaccgattttt-gccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 182  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||     
T  17072739 aaatcggccaccgattttttgccgaacttgaagctcaaataaaacaggtcaaaatcggccactgtaccttgaaaatcggccaccgattttcagctttcaa 17072640  T
Q  183 aattccaatttcttcaatttt 203  Q
    |||||||||||||| ||||||    
T  17072639 aattccaatttctttaatttt 17072619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24126816 - 24126720
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||| | || || | ||||| ||||||||| ||||||||||||||||||||||    
T  24126816 tatatttatagtaaaagaatcctcaataaaactggaacaaatctagactcgaaaatacatttatgttttattttctgctgtcaaaatcggccaccga 24126720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 695697 - 695631
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  695697 aaaatcggccaccaattttcagcttccagaatttcaatttcttcaattttgaggcactttcacaaca 695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10474642 - 10474738
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| |||||| |||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||||||    
T  10474642 tatatttatagtaagagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 10474738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20044970 - 20044755
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||| || || | ||| | |||||||   | |||||||||||||||||||||      
T  20044970 tatatttatagtaaaagaatcctcaataaaactggaacaaatctagacccgaaaatacatttctgttttattccctactgtcaaaatcggccaccgataa 20044871  T
Q  101 ttgccgaacctaaagctcaaataaaaca---tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttc 197  Q
     || |||||| || || |||| ||||||   || |||| |||| ||||| |||  |       |||||| |||||| |||| ||||||||||||||||||    
T  20044870 atgtcgaaccaaaggc-caaaaaaaacaaactg-caaattcggccaccgagcccgg-------gccaccgattttctgcttccagaattccaatttcttc 20044780  T
Q  198 aattttgaggcactttcacaacaat 222  Q
    ||||||||| |||||||||||||||    
T  20044779 aattttgagtcactttcacaacaat 20044755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39398311 - 39398405
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccg 96  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||||| ||||||||| ||||||| |||||||||||||    
T  39398311 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttatgttttattttctgctgtc-aaatcggccaccg 39398405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17072843 - 17072747
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| ||  || || ||||||| ||||||||| | ||||||||||||||||||||    
T  17072843 tatatttatagtaaaagaatcctcaataaaaatggaacaaatctaggcctgaaaatacgtttatgttttattttctactgtcaaaatcggccaccga 17072747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 20042858 - 20042770
Alignment:
Q  132 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 220  Q
    |||| |||| ||||||||| |||||||| |||| ||||||||  ||| |||||||||||||||||||||||| |  |||||||||||||    
T  20042858 caaattcggccaccgtgccctgaaaatcggccatcaattttcttcttccagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2723927 - 2723833
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccacc 95  Q
    ||||||| |||||||||||||||||||||   | |||||||||||| ||| || || ||||| | ||||||||  ||||||||||||||||||||    
T  2723927 tatatttatagtaaaagaatcctcaataaacttggaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccacc 2723833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 20043010 - 20042914
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| ||| |||||||| ||| || || ||||| | ||||||||  || | |||||||||||||||||    
T  20043010 tatatttatagtaaaagaatcctcaataaaactggaataaatctaggcccgaaaatacgtttctgttttatttcctgatctcaaaatcggccaccga 20042914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 27107320 - 27107458
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacat-gtc-aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttca 181  Q
    ||||||||||||||||||||||||||| || ||    ||||||||  ||| |||||||| |||| |||  |||||||| |||| | ||||||||||| ||    
T  27107320 aaatcggccaccgatttttgccgaaccaaaggcc---ataaaacagagtccaaaatcggccaccatgctctgaaaatcggccatcgattttcagcttcca 27107416  T
Q  182 gaattccaatttcttcaattttgaggcactttcacaacaatt 223  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27107417 gaattctaatttcttcaattttgaggcactttcacaacaatt 27107458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 26775114 - 26774978
Alignment:
Q  84 aaatcggccaccgatttttgccgaacctaaagctcaaataaa-acatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 182  Q
    ||||||| |||||| ||||||||||| |||||  |||| ||| | ||  |||||||||||| |||||  |||||||| |||||| |||||| |||  |||    
T  26775114 aaatcgggcaccgacttttgccgaac-taaaggccaaaaaaacagattccaaaatcggtcaacgtgctctgaaaatcggccaccgattttctgctaccag 26775016  T
Q  183 aattccaatttcttcaattttgaggcactttcacaaca 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26775015 aattccaatttcttcaattttgaggcactttcacaaca 26774978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33541707 - 33541799
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggcca 93  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||    
T  33541707 tatatttatagtaaaagaatcctcaataaaactcgaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggcca 33541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14477292 - 14477196
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| ||| |||||||||||| || || ||||| | ||||||||  ||||||||||||||||||||||    
T  14477292 tatatttatagtaaaagaatcctcaataaaactggaataaatctagacccgaaaatacgtttctattttatttcttgctgtcaaaatcggccaccga 14477196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27107216 - 27107308
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggcca 93  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||| ||| || || ||||| | ||||||||| ||||||||||||||||||    
T  27107216 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggcca 27107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 33541860 - 33541927
Alignment:
Q  154 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 221  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33541860 aaaatcggccaccgattttcagcttccagaattccaatttctttaattttgaggcactttcacaacaa 33541927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15186029 - 15186247
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccgattt 100  Q
    ||||||| ||||||||| ||||   |||| | | |||||||||||| ||| || || ||||| | ||||||||  ||||||||||||||||||||||       
T  15186029 tatatttatagtaaaagtatccctcataaaattggaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccaccgaaaa 15186128  T
Q  101 ttgccgaacctaaagctcaaataaaacat-gtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaa 199  Q
    ||  |||||| |||||| ||| ||| ||| ||  || |||| ||||| ||| ||||||||  | ||| |||||  |||| || |||||| ||||||||||    
T  15186129 ttcacgaacc-aaagctgaaa-aaatcatagtgcaattcggccaccgagccctgaaaatcgacgaccgattttttgcttccataattcctatttcttcaa 15186226  T
Q  200 ttttgaggcactttcacaaca 220  Q
    ||||||| |||||||||||||    
T  15186227 ttttgagtcactttcacaaca 15186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 25952537 - 25952441
Alignment:
Q  1 tatatttttagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattttatgctgtcaaaatcggccaccga 97  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||  ||| || || ||||| || |||||||  || |||||||||| ||| ||||    
T  25952537 tatatttatagtaaaagaatcctcaataaaactggaacaaatctaagcccgaaaatacgtttcttgtttatttcctgttgtcaaaatcagcccccga 25952441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 5372504 - 5372568
Alignment:
Q  9 tagtaaaagaatcctcaataatactcgaacaaatctagaccctaacatgcgtttattttttattt 73  Q
    ||||||||||||||||||||  ||| ||| |||||||||||| || || ||||| | ||||||||    
T  5372504 tagtaaaagaatcctcaatagaactagaaaaaatctagacccgaaaatacgtttctattttattt 5372568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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