View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6672_high_4 (Length: 388)

Name: NF6672_high_4
Description: NF6672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6672_high_4
NF6672_high_4
[»] chr4 (3 HSPs)
chr4 (20-380)||(52350451-52350812)
chr4 (143-282)||(20303938-20304076)
chr4 (154-280)||(20298067-20298193)
[»] chr5 (11 HSPs)
chr5 (143-282)||(30473961-30474100)
chr5 (143-280)||(30481989-30482126)
chr5 (176-280)||(30398671-30398775)
chr5 (143-278)||(30434481-30434616)
chr5 (143-279)||(30339834-30339970)
chr5 (144-282)||(30429526-30429664)
chr5 (143-280)||(30243681-30243818)
chr5 (143-278)||(29870845-29870980)
chr5 (144-282)||(30523010-30523148)
chr5 (144-282)||(30563350-30563488)
chr5 (143-203)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (154-280)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 52350812 - 52350451
Alignment:
Q  20 aaatgaacccttaagcctggctttagaacgtctgcaa-tttctcgttgtggtgaccttgagtcttcaccggagcaaatgttggaaggtcttcaatccctt 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350812 aaatgaacccttaagcctggctttagaacgtctgcaaatttctcgttgtggtgaccttgagtcttcaccggagcaaatgttggaaggtcttcaatccctt 52350713  T
Q  119 caaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacat 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350712 cgaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacat 52350613  T
Q  219 taaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttggtattgattagaataaaaaagcagacatgtttga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52350612 taaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttggtattgaatagaataaaaaagcagacatgtttga 52350513  T
Q  319 agaacattgagtcaacttgtttattcttatatacttccaccaccactgttattacctttgct 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350512 agaacattgagtcaacttgtttattcttatatacttccaccaccactgttattacctttgct 52350451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 20303938 - 20304076
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||||||| |||||| ||| ||||||||   |||||||||||||||||  ||| ||||| ||| ||||||||||||||||| || || ||    ||||    
T  20303938 ggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaa 20304037  T
Q  243 caggggaggactatgacaaaatagcgcacattccaaaatt 282  Q
    |||| ||||| |  ||||| |||||||| |||||||||||    
T  20304038 caggcgagga-ttggacaagatagcgcatattccaaaatt 20304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 280
Target Start/End: Original strand, 20298067 - 20298193
Alignment:
Q  154 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 253  Q
    |||||||||| | |||| | | |||||||| |||||| | ||||||||  || ||||||| |||||||||   ||||| || || ||||||||||||||     
T  20298067 cttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggat 20298166  T
Q  254 tatgacaaaatagcgcacattccaaaa 280  Q
    |  ||||| ||||| || |||||||||    
T  20298167 tgggacaagatagctcatattccaaaa 20298193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 30474100 - 30473961
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||||||||||| || |||| ||||| | | ||||||||||||||| |  |||  ||| | | |||||||||||||||||||||||  ||  ||||||    
T  30474100 ggattgagatcctttcccgaatctattcaacacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaa 30474001  T
Q  243 caggggaggactatgacaaaatagcgcacattccaaaatt 282  Q
    | || |||||||  ||||| ||||||||||||||||||||    
T  30474000 ccggtgaggactgggacaagatagcgcacattccaaaatt 30473961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 30482126 - 30481989
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||||| ||||| ||||| || |||||||||||| |||| ||||| || || ||||    
T  30482126 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaa 30482027  T
Q  243 caggggaggactatgacaaaatagcgcacattccaaaa 280  Q
    || ||||||| |  ||||| ||||| || |||||||||    
T  30482026 catgggaggattgggacaagatagctcatattccaaaa 30481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 30398775 - 30398671
Alignment:
Q  176 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 275  Q
    |||||||| |||||||| ||||| ||   ||||||||||||||||||||| ||||| || || |||||||||||||| |  ||||| ||||| || ||||    
T  30398775 ctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattc 30398676  T
Q  276 caaaa 280  Q
    |||||    
T  30398675 caaaa 30398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 30434616 - 30434481
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||| ||||   ||||||||||||||||||||| ||||| || || ||||    
T  30434616 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaa 30434517  T
Q  243 caggggaggactatgacaaaatagcgcacattccaa 278  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  30434516 caggggaggattgggacaagatagctcatattccaa 30434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 30339834 - 30339970
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||||||||   | |||||||||||||| |||| ||||| || || ||||    
T  30339834 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaa 30339933  T
Q  243 caggggaggactatgacaaaatagcgcacattccaaa 279  Q
    |||||||||| |  ||||| ||||| || ||||||||    
T  30339934 caggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 30429664 - 30429526
Alignment:
Q  144 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 243  Q
    ||||||||| |||||||||| ||||||   | ||||| ||||||||||| ||| | |||| || ||||||| |  ||| |||||||||||| || ||||     
T  30429664 gattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaat 30429565  T
Q  244 aggggaggactatgacaaaatagcgcacattccaaaatt 282  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  30429564 aggagaggactgggacaagatagaacacattcctaaatt 30429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 30243681 - 30243818
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| ||||||||  ||| ||||| | | || ||||||||| |||| ||||| || || ||||    
T  30243681 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaa 30243780  T
Q  243 caggggaggactatgacaaaatagcgcacattccaaaa 280  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  30243781 caggggaggattgggacaagatagctcatattccaaaa 30243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 29870980 - 29870845
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 242  Q
    |||||| ||| |||||| ||  |||||||| | ||||||||||||||| | ||| | |||   | ||||||||||||| |||| ||||| || || ||||    
T  29870980 ggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaa 29870881  T
Q  243 caggggaggactatgacaaaatagcgcacattccaa 278  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  29870880 caggggaggattgggacaagatagctcatattccaa 29870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 30523010 - 30523148
Alignment:
Q  144 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 243  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30523010 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30523109  T
Q  244 aggggaggactatgacaaaatagcgcacattccaaaatt 282  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30523110 aggagaggactgggacatgatagaacacattccaaaatt 30523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 30563350 - 30563488
Alignment:
Q  144 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 243  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30563350 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30563449  T
Q  244 aggggaggactatgacaaaatagcgcacattccaaaatt 282  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30563450 aggagaggactgggacatgatagaacacattccaaaatt 30563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 30395962 - 30395902
Alignment:
Q  143 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactattt 203  Q
    ||||||| |||||||| |||| |||||| |   ||||||||||||||||| ||||||||||    
T  30395962 ggattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactattt 30395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 26706046 - 26705920
Alignment:
Q  154 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 253  Q
    |||||||||  |||||||| | |||||||| |||||| | ||||  |||||   ||||||||||||| |||| ||||| || || ||||||||||||||     
T  26706046 cttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggat 26705947  T
Q  254 tatgacaaaatagcgcacattccaaaa 280  Q
    |  ||||| ||||| || |||||||||    
T  26705946 tgggacaagatagctcatattccaaaa 26705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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