View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6672_low_6 (Length: 267)

Name: NF6672_low_6
Description: NF6672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6672_low_6
NF6672_low_6
[»] chr8 (1 HSPs)
chr8 (1-255)||(8636715-8636964)
[»] chr6 (2 HSPs)
chr6 (51-89)||(3114967-3115005)
chr6 (58-164)||(7145580-7145682)
[»] chr4 (5 HSPs)
chr4 (67-162)||(7424202-7424293)
chr4 (125-184)||(9078278-9078337)
chr4 (124-164)||(21496420-21496460)
chr4 (127-167)||(44139288-44139328)
chr4 (115-167)||(54069267-54069319)
[»] chr3 (1 HSPs)
chr3 (141-253)||(21873581-21873693)
[»] chr5 (1 HSPs)
chr5 (201-251)||(32702696-32702746)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8636715 - 8636964
Alignment:
Q  1 tttacttttgcaccttgaacatgtttgatgaattgtctgtttggtttaatttttggggtaaataatcaatttggtccctgaaattgtagaactgtatgta 100  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||        
T  8636715 tttactttagcaacttgaacatgtttgatgaattgtctgtttggtttaatttttgga-taaataatcaatttggtccctgaaattgtagaactgta---- 8636809  T
Q  101 tcaacataatctcatacattaataatattccaaagtgatccttgaaattgcaaaatgttaatcaaatccgttcctttgttggtagtgatatggactaaag 200  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8636810 tcaacataatctcatacattaatagtaatccaaagtgatccttgaaattgcaaaatgctaatcaaatccgttcctttgttggtagtgatatggactaaag 8636909  T
Q  201 tgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatgtctg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636910 tgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatgtctg 8636964  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 3114967 - 3115005
Alignment:
Q  51 ttttggggtaaataatcaatttggtccctgaaattgtag 89  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3114967 ttttggggtaaatactcaatttggtccctgaaattgtag 3115005  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 7145682 - 7145580
Alignment:
Q  58 gtaaataatcaatttggtccctgaaattgtagaactgtatgtatcaacataatctcatacattaataatattccaaagtgatccttgaaattgcaaaatg 157  Q
    ||||||| |||||||||||||| ||||||||| ||    ||| ||||| ||||||| || ||||  ||||||||||| |||||| |  ||||| |||||     
T  7145682 gtaaatactcaatttggtccctaaaattgtaggac----tgtgtcaacttaatctcttagattatcaatattccaaaatgatccctataattgtaaaata 7145587  T
Q  158 ttaatca 164  Q
    |||||||    
T  7145586 ttaatca 7145580  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 7424202 - 7424293
Alignment:
Q  67 caatttggtccctgaaattgtagaactgtatgtatcaacataatctcatacattaataatattccaaagtgatccttgaaattgcaaaatgttaat 162  Q
    ||||||| ||||| ||||||||| |||||||    |||| || ||||  ||||||| |||||| |||| |||||| ||||||||||||||||||||    
T  7424202 caatttgatccctaaaattgtaggactgtat----caacctagtctctgacattaacaatatttcaaaatgatccctgaaattgcaaaatgttaat 7424293  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 9078278 - 9078337
Alignment:
Q  125 atattccaaagtgatccttgaaattgcaaaatgttaatcaaatccgttcctttgttggta 184  Q
    |||||||||| ||||||| ||||||||||||| |||||||||| ||| ||| | ||||||    
T  9078278 atattccaaaatgatcctcgaaattgcaaaattttaatcaaattcgtccctctattggta 9078337  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 21496420 - 21496460
Alignment:
Q  124 aatattccaaagtgatccttgaaattgcaaaatgttaatca 164  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  21496420 aatatttcaaaatgatccctgaaattgcaaaatgttaatca 21496460  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 44139288 - 44139328
Alignment:
Q  127 attccaaagtgatccttgaaattgcaaaatgttaatcaaat 167  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  44139288 attccacaatgatacttgaaattgcaaaatgttaatcaaat 44139328  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 54069267 - 54069319
Alignment:
Q  115 tacattaataatattccaaagtgatccttgaaattgcaaaatgttaatcaaat 167  Q
    |||||||  ||||||||||| |  |||||||||||||||||| ||||||||||    
T  54069267 tacattatgaatattccaaaattttccttgaaattgcaaaatattaatcaaat 54069319  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 21873693 - 21873581
Alignment:
Q  141 cttgaaattgcaaaatgttaatcaaatccgttcctttgttggtagtgatatggactaaagtgacattaagttggtaatgtcggagatgcaagtgaaaata 240  Q
    |||||||||||||||| |||||||||  ||||||| | |||||| |  || |||||| | ||||||||| |||||||| || | |||| |   |||| ||    
T  21873693 cttgaaattgcaaaattttaatcaaactcgttcctctattggtatttgtagggactagaatgacattaaattggtaatatcagggatgaattggaaacta 21873594  T
Q  241 agtgaataatgtc 253  Q
    |||||||||||||    
T  21873593 agtgaataatgtc 21873581  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 32702696 - 32702746
Alignment:
Q  201 tgacattaagttggtaatgtcggagatgcaagtgaaaataagtgaataatg 251  Q
    ||||| ||||||||||||||||||||||||  ||||| |||| ||||||||    
T  32702696 tgacaataagttggtaatgtcggagatgcatttgaaactaagagaataatg 32702746  T

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