View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_high_1 (Length: 915)
Name: NF6676_high_1
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Original strand, 43186331 - 43186836
Alignment:
| Q |
12 |
tcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacggccactaccgcggctacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
43186331 |
tcatcataaacactaaaataatcttaaaggatacaccggacctctgcatggggggcggaaggcagctgctccgctatcacagccaccaccgcggctacta |
43186430 |
T |
|
| Q |
112 |
tcgtctattggcaacagatactcgatgtagcaaaccaattgtgtagccttctgcttgcatgctacccatccctcctaagctttgacaacttcacactatg |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186431 |
tcgtctattggcaacagatactcaatgtagcaaaccaatttggtagcctcctgcttgcatgctacccatccctcctaagctttgacaacttcacactatg |
43186530 |
T |
|
| Q |
212 |
acaattaggccccacttggatctttggacaatgccacttgaatcttaactat-aggaatccacaacactcattttcattccatcttcgaaattcactctg |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186531 |
acaattaggccccacttgcatctttggacaatgccacttgaatcttaacttttaggaatccacaacactcattttcattccatcttcgaaattcactctg |
43186630 |
T |
|
| Q |
311 |
actcgttcttcataacataaattcattcattttcattattcatcgccgaaattcatccggactcgttattaaccaatatatttttatactaaaataatca |
410 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43186631 |
actcgttcttcataacataaattcattaattttcattattcatcgcagaaattcatccggactcgttattaaccaatatatttttatactaacataatca |
43186730 |
T |
|
| Q |
411 |
aacattaaaaaggatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatatt |
510 |
Q |
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| T |
43186731 |
aacattaaaaagcatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatatt |
43186830 |
T |
|
| Q |
511 |
ctgatt |
516 |
Q |
| |
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|||||| |
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| T |
43186831 |
ctgatt |
43186836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 646 - 915
Target Start/End: Original strand, 43187860 - 43188129
Alignment:
| Q |
646 |
ttctgctatttgagtagtttaattgcggtttgagtggtttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
745 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187860 |
ttctgttatttgattagtttaattgcggtttgagtgatttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
43187959 |
T |
|
| Q |
746 |
gcaattaattgaattcatattgtgacctccactgatatctttcaattcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
845 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187960 |
gcaattaattgaattcatattgtgacctccactgatatctttcagttcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
43188059 |
T |
|
| Q |
846 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaggcatttagtgactcttactgagc |
915 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
43188060 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttattgagc |
43188129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 512 - 646
Target Start/End: Original strand, 43187115 - 43187248
Alignment:
| Q |
512 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccaatcaacggaatagagaagggaatcaagtgtgtttttgattg |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43187115 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccgatcaatggaatagagaagggaatcaagtgtgtttttgattg |
43187214 |
T |
|
| Q |
612 |
agtttgaattctcatgactgtgtaaatctgtgttt |
646 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
43187215 |
agtttgaattctcatgactgtgt-aatctgtgttt |
43187248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 727 - 770
Target Start/End: Original strand, 22710090 - 22710133
Alignment:
| Q |
727 |
gttcagtctttaaaacactgcaattaattgaattcatattgtga |
770 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22710090 |
gttcagtctttaaaacactgcaattaattgaagtcatattgtga |
22710133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
255 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
311 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
263 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
323 |
Q |
| |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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