View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_high_12 (Length: 223)
Name: NF6676_high_12
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_high_12 |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 24418191 - 24417986
Alignment:
| Q |
3 |
gatcccaaattcgcaaacaagcaccttcacttgtcaaccaggcgccatcgcctcatgttaatgtctaccaacgacttaggtcacttagttctctttaatt |
102 |
Q |
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| T |
24418191 |
gatcccaaattcgcaaacaagcaccttcgcttgtcaaccaggcgccatcgcctcatgttaatgtctaccaacgacttaggtcacttagttctctttaatt |
24418092 |
T |
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| Q |
103 |
ccctaataccctctgatttttcaaactctactgtcagttaccctgactgcctcaaaattggaaaaagtcagccttatcgcgtgtgctcttgcaacggcat |
202 |
Q |
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| T |
24418091 |
ccctaataccctctgatttttcaacctctactgtcagttaccctgactgcctcaaaattggaaaaagtgggccttatcgcgtgtgctcttgcaacggcat |
24417992 |
T |
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| Q |
203 |
cctttg |
208 |
Q |
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|||||| |
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| T |
24417991 |
cctttg |
24417986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 3987 - 4100
Alignment:
| Q |
21 |
aagcaccttcacttgtcaaccaggcgccatcgcctcatgttaatgtctaccaacgacttaggtcacttagttctctttaattccctaataccctctgatt |
120 |
Q |
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||||||||||| |||||||| | |||||| | |||| || ||| |||||||| ||||||| | ||| |||||||| |||| | |||||||||||||| |
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| T |
3987 |
aagcaccttcagttgtcaacaaagcgccaccacctcttggtaagcactaccaacaacttaggcgagttacttctctttgattcaccaataccctctgatt |
4086 |
T |
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| Q |
121 |
tttcaaactctact |
134 |
Q |
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| T |
4087 |
tttcattctctact |
4100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7334992 - 7334936
Alignment:
| Q |
3 |
gatcccaaattcgcaaacaagcaccttcacttgtcaaccaggcgccatcgcctcatg |
59 |
Q |
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| T |
7334992 |
gatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatg |
7334936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 9566543 - 9566483
Alignment:
| Q |
3 |
gatcccaaattcgcaaacaagcaccttcacttgtcaaccaggcgccatcgcctcatgttaa |
63 |
Q |
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||||| ||||||||||| || || ||||| |||||||| | |||||||| ||||||||||| |
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| T |
9566543 |
gatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaa |
9566483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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