View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_high_2 (Length: 622)
Name: NF6676_high_2
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 610
Target Start/End: Original strand, 39307769 - 39308363
Alignment:
| Q |
17 |
cttcttttagaacttgcaattccaacaagtgttttagcaaaggaaatgagaggaggaacgttgagaattgtgctagaaagtgctacctcaggatcttgta |
116 |
Q |
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| T |
39307769 |
cttcttttagaacttgcaattccaacaagtgttttagcaaaggaaatgagaggaggaacgttgagaattgtgctagaaagtgctacctcaggatcttgta |
39307868 |
T |
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| Q |
117 |
acaataacagtaacttgttttcaactcctctatggattatgtactgtaatgggaggaaagtcgggtattcggttaagcgtaagccttcaagaagcgattt |
216 |
Q |
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| T |
39307869 |
acaataacagtaacttgttttcaactcctctttggattatgtactgtaatgggaggaaagtcgggtattcggttaagcgtaagccttcaagaagtgattt |
39307968 |
T |
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| Q |
217 |
agaagcacttaacttgatgcggtcggtttctgttggtactggtgttataaatggaaaagagatttgtcaagaagatgatcaacttatgtatcttagagct |
316 |
Q |
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| T |
39307969 |
agaagcacttaacttgatgcggtcggtttctgttggtactggtgttataaatggaaaagagatttgtcaagaagatgatcaacttatgtatcttagagct |
39308068 |
T |
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| Q |
317 |
aactttcaaagggttcgtggttcttctaaatctaattgtgaatcttttcatttgattgatcctgaaggaagcattggtcaagagcttagtattttctttt |
416 |
Q |
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| T |
39308069 |
aactttcaaagggttcgtggttcttctaaatctaattgtgaatcttttcatttgattgatcctgaaggaagcattggtcaagagcttagtattttctttt |
39308168 |
T |
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| Q |
417 |
ttcaatcaaaatgaccttgttgatgttttcgtttagaagtcacgtccgctgcannnnnnnnnctgaggtattgttcgctttggatcttgagtgtgtcctc |
516 |
Q |
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| T |
39308169 |
ttcaatcaaaatgaccttgttgatgttttcgtttagaagtcatgtccgctgcatttttttttctgaggtattgttcgctttggatcttgagtgtgtcctc |
39308268 |
T |
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| Q |
517 |
-gtggctttgtcgttaaaaggcgtgtgaataggttggggagacgggatgtttataaactactattaaccttgatttgcaagtcatgtctgatttt |
610 |
Q |
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| T |
39308269 |
tgtgactttgtcgttaaaaggcgtgtgaataggttggggagacgggatgtttataaactactattaaccttgatttgcaagtcatgtctgatttt |
39308363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 37495139 - 37495167
Alignment:
| Q |
353 |
tgtgaatcttttcatttgattgatcctga |
381 |
Q |
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| T |
37495139 |
tgtgaatcttttcatttgattgatcctga |
37495167 |
T |
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