View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_high_6 (Length: 342)
Name: NF6676_high_6
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 33535093 - 33534764
Alignment:
| Q |
1 |
atatagatcattcattcattatcaaatatagagcaaactccactttnnnnnnnnnnnnntactgaacaaattcaacacaaaatgaaacagtagtatttca |
100 |
Q |
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| T |
33535093 |
atatagatcattcattcattatcaaatatagagcaaactccactttaaaaaaaaaaa--tactgaacaaattcaacacaaaatgaaatagtagtatttca |
33534996 |
T |
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| Q |
101 |
taggaagaaacacatcctccaatcacatattgtacagcttttttcatgcttcagtacatataaattgaagctaatttccaataacatatgcttccaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33534995 |
taggaagaaacacatcctccaatcacatattatacagcttttttcatgcttcagtacatataaattgaagctaatttccaataacatatgcttccaagtt |
33534896 |
T |
|
| Q |
201 |
ctccttgttggacactcttaaaacagaatccttcttctcacttgatttcacaggagagcatttgaaatcaaaactttcatcagacctcttttttgtaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33534895 |
ctccttgttggacactcttaaaacagaatccttcttctcacttgatttcacaggagagcatttgaaatcaaaactttcatcagacctcttttttgtaggg |
33534796 |
T |
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| Q |
301 |
attggtgttccatattgggagagttccctttg |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33534795 |
attggtgttccatattgggagagttccctttg |
33534764 |
T |
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