View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_low_14 (Length: 239)
Name: NF6676_low_14
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_low_14 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 24417902 - 24417684
Alignment:
| Q |
12 |
aacaactttctctctccttatatagctttgggtataatccttccgttaataattacaagattgttgctatttctagtcgatttggcaaaactaaaattag |
111 |
Q |
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| T |
24417902 |
aacaactttttctctccttatatagctttgggtataatccttccgttaataattacaagattgttgctatttctggtcgatttggcaaaactaaaattag |
24417803 |
T |
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| Q |
112 |
tgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactattaat |
211 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24417802 |
tgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactattaat |
24417703 |
T |
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| Q |
212 |
tggttggtggtagatgatg |
230 |
Q |
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|||||||||||||| |||| |
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| T |
24417702 |
tggttggtggtagacgatg |
24417684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 33026384 - 33026488
Alignment:
| Q |
110 |
agtgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactatta |
209 |
Q |
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||||||||||| |||||||| || |||||||| ||||| ||||||||||||| | ||||||| |||| || ||||||||| ||||||||||| ||| |
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| T |
33026384 |
agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttgagtggcactgtta |
33026483 |
T |
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| Q |
210 |
attgg |
214 |
Q |
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||||| |
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| T |
33026484 |
attgg |
33026488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 33037881 - 33037988
Alignment:
| Q |
110 |
agtgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactatta |
209 |
Q |
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| T |
33037881 |
agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcggtggcactgtta |
33037980 |
T |
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| Q |
210 |
attggttg |
217 |
Q |
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|||||||| |
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| T |
33037981 |
attggttg |
33037988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 33020043 - 33020151
Alignment:
| Q |
110 |
agtgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactatta |
209 |
Q |
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||||||||||| ||||||| || |||||||| ||||| ||||||||||| || | |||||| | | ||| |||||||||||||||||||| ||| |
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| T |
33020043 |
agtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcacagtta |
33020142 |
T |
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| Q |
210 |
attggttgg |
218 |
Q |
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| T |
33020143 |
attggttgg |
33020151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 1871 - 1981
Alignment:
| Q |
108 |
ttagtgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactat |
207 |
Q |
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||||||||||||| ||||||| ||||||||| | |||||| |||||||||||| || | |||||| | ||| ||||||||||||| ||||| | | |
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| T |
1871 |
ttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgt |
1970 |
T |
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| Q |
208 |
taattggttgg |
218 |
Q |
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| T |
1971 |
taattggttgg |
1981 |
T |
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Target: scaffold0760 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 4366 - 4476
Alignment:
| Q |
108 |
ttagtgttcataccctgggtacaaattcttggagagcgatacaagacttcccatattctcgcccgttacatcggttgggaatatttgtgagtggcactat |
207 |
Q |
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||||||||||||| ||||||| ||||||||| | |||||| |||||||||||| || | |||||| | ||| ||||||||||||| ||||| | | |
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| T |
4366 |
ttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgt |
4465 |
T |
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| Q |
208 |
taattggttgg |
218 |
Q |
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||||||||||| |
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| T |
4466 |
taattggttgg |
4476 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 771811 - 771769
Alignment:
| Q |
122 |
ctgggtacaaattcttggagagcgatacaagacttcccatatt |
164 |
Q |
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| T |
771811 |
ctgggtacagattcttggagaaggatacaagacttcccatatt |
771769 |
T |
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