View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6676_low_2 (Length: 782)

Name: NF6676_low_2
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6676_low_2
NF6676_low_2
[»] chr5 (16 HSPs)
chr5 (177-520)||(39030680-39031024)
chr5 (16-179)||(39030393-39030556)
chr5 (662-782)||(12913821-12913938)
chr5 (700-782)||(19655176-19655258)
chr5 (651-782)||(29699385-29699513)
chr5 (696-772)||(28818945-28819021)
chr5 (710-782)||(39031199-39031271)
chr5 (650-782)||(291115-291244)
chr5 (595-632)||(39031097-39031134)
chr5 (650-772)||(16971172-16971291)
chr5 (650-742)||(2953248-2953337)
chr5 (699-777)||(16439161-16439239)
chr5 (700-772)||(3899867-3899939)
chr5 (700-772)||(16802472-16802544)
chr5 (698-747)||(228403-228452)
chr5 (690-727)||(7009401-7009438)
[»] scaffold0586 (1 HSPs)
scaffold0586 (662-782)||(7050-7167)
[»] chr8 (10 HSPs)
chr8 (650-782)||(5033179-5033308)
chr8 (650-782)||(33841582-33841711)
chr8 (701-777)||(45191166-45191242)
chr8 (711-782)||(4958617-4958688)
chr8 (700-782)||(10086775-10086857)
chr8 (696-762)||(34229679-34229745)
chr8 (700-782)||(35441007-35441089)
chr8 (698-772)||(6296633-6296707)
chr8 (700-781)||(5667116-5667197)
chr8 (700-772)||(39850983-39851055)
[»] chr4 (15 HSPs)
chr4 (650-782)||(47661860-47661989)
chr4 (650-782)||(23444260-23444389)
chr4 (690-772)||(40789207-40789289)
chr4 (702-782)||(35682184-35682264)
chr4 (696-779)||(26186050-26186131)
chr4 (650-772)||(42375038-42375157)
chr4 (700-782)||(6271720-6271802)
chr4 (700-782)||(51265463-51265545)
chr4 (696-772)||(47762636-47762712)
chr4 (700-768)||(52028581-52028649)
chr4 (696-772)||(55090030-55090106)
chr4 (700-751)||(28693961-28694012)
chr4 (700-743)||(31430499-31430542)
chr4 (699-782)||(31532726-31532809)
chr4 (696-733)||(47404619-47404656)
[»] chr1 (20 HSPs)
chr1 (696-782)||(4609014-4609100)
chr1 (700-774)||(46333984-46334058)
chr1 (650-782)||(48993908-48994037)
chr1 (710-782)||(36290455-36290527)
chr1 (696-768)||(47303427-47303499)
chr1 (699-782)||(9157328-9157411)
chr1 (700-782)||(1091582-1091664)
chr1 (650-742)||(15220869-15220958)
chr1 (700-782)||(17127602-17127684)
chr1 (700-781)||(32540786-32540867)
chr1 (696-772)||(8337885-8337961)
chr1 (700-772)||(29371396-29371468)
chr1 (700-782)||(29179635-29179717)
chr1 (700-782)||(37155064-37155146)
chr1 (699-774)||(33219599-33219674)
chr1 (696-782)||(45728305-45728391)
chr1 (696-772)||(5694924-5694999)
chr1 (724-782)||(21630060-21630118)
chr1 (700-781)||(5995388-5995469)
chr1 (690-735)||(38674533-38674578)
[»] chr6 (5 HSPs)
chr6 (662-781)||(17750921-17751037)
chr6 (700-772)||(10521887-10521959)
chr6 (662-772)||(24618604-24618711)
chr6 (650-755)||(13043502-13043604)
chr6 (696-777)||(551199-551280)
[»] chr2 (11 HSPs)
chr2 (685-782)||(8534164-8534261)
chr2 (650-781)||(6721970-6722098)
chr2 (650-772)||(38933615-38933734)
chr2 (700-782)||(15011298-15011380)
chr2 (700-782)||(16514442-16514524)
chr2 (661-772)||(6217226-6217334)
chr2 (700-772)||(2828612-2828684)
chr2 (696-772)||(2893991-2894067)
chr2 (700-772)||(37961734-37961806)
chr2 (661-762)||(14229355-14229453)
chr2 (703-772)||(29925611-29925680)
[»] chr3 (15 HSPs)
chr3 (702-782)||(30734442-30734522)
chr3 (661-775)||(50524727-50524838)
chr3 (688-751)||(34060234-34060297)
chr3 (700-782)||(33689194-33689276)
chr3 (702-772)||(47677295-47677365)
chr3 (661-772)||(1801448-1801556)
chr3 (690-755)||(29031742-29031807)
chr3 (650-733)||(45103100-45103180)
chr3 (696-782)||(18321669-18321755)
chr3 (699-781)||(51046110-51046192)
chr3 (662-721)||(33689179-33689235)
chr3 (697-782)||(43139744-43139829)
chr3 (700-772)||(30476512-30476584)
chr3 (700-782)||(47492085-47492167)
chr3 (723-772)||(39385749-39385798)
[»] chr7 (9 HSPs)
chr7 (696-782)||(41945873-41945959)
chr7 (700-781)||(15027561-15027642)
chr7 (650-772)||(42628323-42628442)
chr7 (650-782)||(11016887-11017016)
chr7 (700-772)||(27028831-27028903)
chr7 (700-782)||(41018266-41018348)
chr7 (700-772)||(7671949-7672021)
chr7 (715-782)||(22764753-22764820)
chr7 (712-782)||(30217504-30217574)
[»] scaffold0180 (1 HSPs)
scaffold0180 (652-751)||(19115-19211)
[»] scaffold0047 (1 HSPs)
scaffold0047 (700-772)||(63785-63857)
[»] scaffold0016 (2 HSPs)
scaffold0016 (650-772)||(49694-49813)
scaffold0016 (749-782)||(49721-49754)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 177 - 520
Target Start/End: Original strand, 39030680 - 39031024
Alignment:
Q  177 gtaataagtaaacaataatttaaacattgaactnnnnnnntaaaatctaaacgtgtgaaaaagtccccactagccaaccccttttcctatgtgtgataag 276  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39030680 gtaataagtaaacaataatttaaacattgaactaaaaaa-taaaatctaaacgtgtgaaaaagtccccactagccaaccccttttc-tatgtgtgataag 39030777  T
Q  277 tttatgtc--aagacttaattaatgaccataattagcttagagctttttgctaaaagtgtttaagaatggcatgaagatgaaaagcaatggaagcattaa 374  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030778 tttatgtcttaagacttatttaatgaccataattagcttagagctttttgctaaaagtgtttaagaatggcatgaagatgaaaagcaatggaagcattaa 39030877  T
Q  375 tcttagttagggcacgtgaaagaaagagagaaagcaaagataggtataattgtctcttccaagtcttctttcggcaccttcatatctttgttgnnnnnnn 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  39030878 tcttagttagggcacgtgaaagaaagagagaaagcaaagataggtataattgtctcttccaagtcttctttcggcaccttcatatctttgttgccccccc 39030977  T
Q  475 ttgggggccactagtttaatatcctctc-ttgtcttcacatcagtca 520  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  39030978 ttgggggccactagtttaatatcctctctttgtcttcacatcagtca 39031024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 39030393 - 39030556
Alignment:
Q  16 aatatatacaatggggtcataattatgcaaaaaagaagagacgatatttttacaagtcttacatctaaataatgctacnnnnnnnnnnnnnnnncctcca 115  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||  ||||                ||||||    
T  39030393 aatatatacaatggcgtcataattatggaaaaaaaaagagacgatatttttacaagtcttacatataaataacactactttttatttttattttcctcca 39030492  T
Q  116 atggggctgctaataagctctatatgctattaagctaataagctctaacacatcttaaaacgta 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030493 atggggcagctaataagctctatatgctattaagctaataagctctaacacatcttaaaacgta 39030556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 662 - 782
Target Start/End: Complemental strand, 12913938 - 12913821
Alignment:
Q  662 gtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgatt 761  Q
    ||||||||||||||||| |||||| ||||   | |||||||||||||| ||| ||||||| ||||||||||| | | ||||  ||| ||||||| |||||    
T  12913938 gtgacatagagttgggtgacattggtgat---attggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgatt 12913842  T
Q  762 ggtcaatgtcatcaatgtcac 782  Q
    || |||||||| |||||||||    
T  12913841 ggccaatgtcaccaatgtcac 12913821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 19655258 - 19655176
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| |||||||| |||||||||    
T  19655258 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcac 19655176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 651 - 782
Target Start/End: Complemental strand, 29699513 - 29699385
Alignment:
Q  651 gtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatg 750  Q
    |||||| || |||||||||||||||||| | |||| |||    | ||| |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||    
T  29699513 gtagcacttgggtgacatagagttgggtgatattggtgac---attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtg 29699417  T
Q  751 acattctgattggtcaatgtcatcaatgtcac 782  Q
     |||| ||||||| |||||||| |||||||||    
T  29699416 gcattgtgattggccaatgtcaccaatgtcac 29699385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 696 - 772
Target Start/End: Complemental strand, 28819021 - 28818945
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||| ||||||||||| ||||||||||| |||||||| |||| ||||||| ||||||  ||||||||    
T  28819021 tggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtca 28818945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 710 - 782
Target Start/End: Original strand, 39031199 - 39031271
Alignment:
Q  710 atcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||| ||||||| ||| ||||||||||||||||| ||| |||||| ||| ||||| |||||||||    
T  39031199 atcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcac 39031271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 782
Target Start/End: Complemental strand, 291244 - 291115
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || ||||| |||||||||||| |||||| |||    | || ||||||||||| |||||||| || ||||||||| | ||||||||  ||| |    
T  291244 ggtagcacttgggtgatatagagttgggtgacattggtgac---attgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgt 291148  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| ||||||| |||||||| |||||||||    
T  291147 ggcattgtgattggccaatgtcaccaatgtcac 291115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 39031097 - 39031134
Alignment:
Q  595 tacgtattgttaattgtgtgaagttaactagcttgtaa 632  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39031097 tacgtattgttaattgtgtgaagttaactagcttgtaa 39031134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 772
Target Start/End: Complemental strand, 16971291 - 16971172
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||  |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  16971291 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 16971195  T
Q  750 gacattctgattggtcaatgtca 772  Q
    | |||| ||||||| ||||||||    
T  16971194 ggcattgtgattggccaatgtca 16971172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 742
Target Start/End: Complemental strand, 2953337 - 2953248
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaa 742  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||| |||||||||| ||||||||||| ||||||||||| ||| ||||    
T  2953337 ggtagcacttgggtgacatagagttgggtgacattggtgac---attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaa 2953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 777
Target Start/End: Complemental strand, 16439239 - 16439161
Alignment:
Q  699 tcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaat 777  Q
    ||||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||  |||||||| ||||    
T  16439239 tcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcaccaat 16439161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 3899939 - 3899867
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| ||||||||    
T  3899939 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtca 3899867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 16802544 - 16802472
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||| ||| ||||||||||| | ||||||||| ||| ||||||||| | ||||| ||||||| ||||||||    
T  16802544 caatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtca 16802472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Complemental strand, 228452 - 228403
Alignment:
Q  698 gtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatatt 747  Q
    |||||||||||| ||| ||||||| | ||||||||||||| |||||||||    
T  228452 gtcaatcacaatgtcaaaatgcttgtaaaagagagaaaaacacaaatatt 228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 7009438 - 7009401
Alignment:
Q  690 tgatagtggtcaatcacaatatcacaatgcttatgaaa 727  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  7009438 tgatattggtcaatcacaatatcacaatgcttgtgaaa 7009401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 662 - 782
Target Start/End: Original strand, 7050 - 7167
Alignment:
Q  662 gtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgatt 761  Q
    ||||||||||||||||| |||||| ||||  |||    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| |||||    
T  7050 gtgacatagagttgggtgacattggtgatattagc---caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt 7146  T
Q  762 ggtcaatgtcatcaatgtcac 782  Q
    || |||||||| |||||||||    
T  7147 ggccaatgtcaccaatgtcac 7167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 650 - 782
Target Start/End: Complemental strand, 5033308 - 5033179
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||  |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  5033308 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 5033212  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| |||||||||||||||| |||||||||    
T  5033211 ggcattgtgattggtcaatgtcaccaatgtcac 5033179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 650 - 782
Target Start/End: Original strand, 33841582 - 33841711
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||  |||||||| | ||||||||||| ||||||||||| ||| ||||  ||| |    
T  33841582 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgt 33841678  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | ||||||||||||||||||||| |||||||||    
T  33841679 ggcattctgattggtcaatgtcaccaatgtcac 33841711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 701 - 777
Target Start/End: Original strand, 45191166 - 45191242
Alignment:
Q  701 aatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaat 777  Q
    |||||||||  |||||||||||||||||||||| ||| ||||| ||| | ||||| |||||||||||||||| ||||    
T  45191166 aatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcaccaat 45191242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 711 - 782
Target Start/End: Complemental strand, 4958688 - 4958617
Alignment:
Q  711 tcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    ||||||| ||| ||||||||||| ||| ||||| ||||||||||| ||||||| ||||||||||||| ||||    
T  4958688 tcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtcatcaatatcac 4958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 10086857 - 10086775
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| |||||||| || ||||||||||| ||| ||||| ||||||||||| ||||||  ||||||||  ||||||||    
T  10086857 caatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcactaatgtcac 10086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 696 - 762
Target Start/End: Complemental strand, 34229745 - 34229679
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattg 762  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||    
T  34229745 tggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattg 34229679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 35441007 - 35441089
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| |||||||| |||||||||    
T  35441007 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcac 35441089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 772
Target Start/End: Complemental strand, 6296707 - 6296633
Alignment:
Q  698 gtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||| | ||| ||||||| ||| ||||||||||| ||| ||||  ||||||||||| ||||||||||||||||    
T  6296707 gtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtca 6296633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 781
Target Start/End: Complemental strand, 5667197 - 5667116
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtca 781  Q
    |||| ||||| ||| ||||||| ||||||||||| ||||||||  ||| ||||||| ||||||  |||||||| ||||||||    
T  5667197 caattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtca 5667116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 39851055 - 39850983
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||||| | ||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| ||||||||    
T  39851055 caatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 39850983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 650 - 782
Target Start/End: Complemental strand, 47661989 - 47661860
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    |||||||||| |||||||||||||||||| |||||| |||    | ||  |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  47661989 ggtagcatttgggtgacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 47661893  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| ||||||| |||||||| |||||||||    
T  47661892 ggcattgtgattggccaatgtcaccaatgtcac 47661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 650 - 782
Target Start/End: Original strand, 23444260 - 23444389
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    |||||||||| ||| |||||||||||||| |||||| |||    | ||  |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  23444260 ggtagcatttgggtaacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 23444356  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| ||||||| |||||||| |||||||||    
T  23444357 ggcattgtgattggccaatgtcaccaatgtcac 23444389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 690 - 772
Target Start/End: Complemental strand, 40789289 - 40789207
Alignment:
Q  690 tgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| ||||||| ||||||||    
T  40789289 tgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtca 40789207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 702 - 782
Target Start/End: Complemental strand, 35682264 - 35682184
Alignment:
Q  702 atcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||| ||||||||||| ||||||| ||| ||| |||| |||||||||||| ||||||| |||||||| |||| ||||    
T  35682264 atcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatatcac 35682184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 779
Target Start/End: Original strand, 26186050 - 26186131
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgt 779  Q
    |||||||||||||| ||||||||||| ||||||||||  ||| ||||  ||| ||| ||| ||||||| |||||||||||||||    
T  26186050 tggtcaatcacaatgtcacaatgcttgtgaaagagag--aaacacaagcattgtgaaattgtgattggccaatgtcatcaatgt 26186131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 772
Target Start/End: Complemental strand, 42375157 - 42375038
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | || ||||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  42375157 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 42375061  T
Q  750 gacattctgattggtcaatgtca 772  Q
    | |||| ||||||  ||||||||    
T  42375060 ggcattgtgattgaccaatgtca 42375038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 6271802 - 6271720
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| |||||||| |||| ||||    
T  6271802 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcac 6271720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 51265545 - 51265463
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||| ||| ||||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| |||||||| |||||||||    
T  51265545 caatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcac 51265463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 772
Target Start/End: Complemental strand, 47762712 - 47762636
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||||| || ||| ||||||||||| ||||||||||| ||| | ||| ||| | ||||| ||||||||||||||||    
T  47762712 tggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtca 47762636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 768
Target Start/End: Complemental strand, 52028649 - 52028581
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaat 768  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||  ||||||| ||||    
T  52028649 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaat 52028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 55090030 - 55090106
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||||||| ||||||||||| ||||||||||| | | ||||  ||| ||||||| ||||||  ||||||||    
T  55090030 tggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtca 55090106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 751
Target Start/End: Original strand, 28693961 - 28694012
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatga 751  Q
    ||||||||||||||||||| || ||||||||||| ||| ||||| |||||||    
T  28693961 caatcacaatatcacaatgtttgtgaaagagagagaaacacaaacattatga 28694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 743
Target Start/End: Original strand, 31430499 - 31430542
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaa 743  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||    
T  31430499 caatcacaatgtcacaatgcttatgaaagagagagaaacacaaa 31430542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 782
Target Start/End: Original strand, 31532726 - 31532809
Alignment:
Q  699 tcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    ||||||||||| |||||||   | | ||||||||| ||||||||| ||| |||| || |||||||||||||||| | |||||||    
T  31532726 tcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacctatgtcac 31532809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 733
Target Start/End: Original strand, 47404619 - 47404656
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagaga 733  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  47404619 tggtcaatcacaatgtcacaatgcttgtgaaagagaga 47404656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 696 - 782
Target Start/End: Complemental strand, 4609100 - 4609014
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| |||| ||||||||||| | |||||||    
T  4609100 tggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcac 4609014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 700 - 774
Target Start/End: Original strand, 46333984 - 46334058
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatc 774  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||  ||| ||||||| ||||||||||||||||||    
T  46333984 caatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatc 46334058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 650 - 782
Target Start/End: Original strand, 48993908 - 48994037
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||  |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  48993908 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 48994004  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| |||||||||||||||| |||||||||    
T  48994005 ggcattgtgattggtcaatgtcaccaatgtcac 48994037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 710 - 782
Target Start/End: Original strand, 36290455 - 36290527
Alignment:
Q  710 atcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||||||||||| || |||||||||    
T  36290455 atcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcac 36290527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 696 - 768
Target Start/End: Complemental strand, 47303499 - 47303427
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaat 768  Q
    |||||||||||||| |||||||| || ||||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  47303499 tggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaat 47303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 782
Target Start/End: Complemental strand, 9157411 - 9157328
Alignment:
Q  699 tcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||  ||| ||||||| |||||||||||||| | |||||||||    
T  9157411 tcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcac 9157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 1091582 - 1091664
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| ||||||||||| |||| |||| ||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcac 1091664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 650 - 742
Target Start/End: Complemental strand, 15220958 - 15220869
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaa 742  Q
    |||||||||| |||||||||||||||||| |||||| ||||   | ||| |||||||||| ||||||||||| ||||||||||| ||| ||||    
T  15220958 ggtagcatttgggtgacatagagttgggtgacattggtgat---attggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaa 15220869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 17127602 - 17127684
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||||||||||||  ||||||||    
T  17127602 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcac 17127684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 700 - 781
Target Start/End: Original strand, 32540786 - 32540867
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtca 781  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| | ||||| |||||||||||||||| ||||||||    
T  32540786 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcaccaatgtca 32540867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 8337885 - 8337961
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||||||| |||||||| || ||||||||||| ||| ||||| ||| || |||| ||||||||||||||||    
T  8337885 tggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtca 8337961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 29371468 - 29371396
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| ||||||| ||||||||    
T  29371468 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtca 29371396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 29179635 - 29179717
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| |||||||| |||||||||    
T  29179635 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcac 29179717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 37155146 - 37155064
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||| ||| ||||||||||| ||| ||||  ||| ||||||| ||||||| |||||||| |||||||||    
T  37155146 caatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcac 37155064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 774
Target Start/End: Complemental strand, 33219674 - 33219599
Alignment:
Q  699 tcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatc 774  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||||  ||| | ||||| |||||| |||||||||||    
T  33219674 tcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatc 33219599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 782
Target Start/End: Complemental strand, 45728391 - 45728305
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||||| ||| ||||||| ||||||||||| ||| ||||  ||| ||| ||| |||||||||||| ||| |||| ||||    
T  45728391 tggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcac 45728305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 5694924 - 5694999
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||||||||| | ||||||| ||||||||||| ||| ||||||||| ||||||| | ||||  ||||||||    
T  5694924 tggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtca 5694999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 724 - 782
Target Start/End: Complemental strand, 21630118 - 21630060
Alignment:
Q  724 gaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||| ||||  ||| ||||||| |||||||||||||||| |||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcac 21630060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 781
Target Start/End: Complemental strand, 5995469 - 5995388
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtca 781  Q
    ||||||||||  |||||||||| ||||||||||| ||| ||||  ||| || |||| ||||||| |||||| | ||||||||    
T  5995469 caatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgttaccaatgtca 5995388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 735
Target Start/End: Original strand, 38674533 - 38674578
Alignment:
Q  690 tgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaa 735  Q
    ||||| ||| |||||||||| ||||||||||| |||||||||||||    
T  38674533 tgatattggccaatcacaatgtcacaatgcttgtgaaagagagaaa 38674578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 662 - 781
Target Start/End: Complemental strand, 17751037 - 17750921
Alignment:
Q  662 gtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgatt 761  Q
    ||||||||||||||||| | ||||||||    | ||| | |||||||| ||||||||||| ||||||||||| ||||||||| ||| ||||||| |||||    
T  17751037 gtgacatagagttgggtgatattgatgac---attggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgatt 17750941  T
Q  762 ggtcaatgtcatcaatgtca 781  Q
    |  |||||||| ||||||||    
T  17750940 gaccaatgtcaccaatgtca 17750921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 700 - 772
Target Start/End: Original strand, 10521887 - 10521959
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||  ||||||||||| ||||||  ||||||||    
T  10521887 caatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtca 10521959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 662 - 772
Target Start/End: Original strand, 24618604 - 24618711
Alignment:
Q  662 gtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgatt 761  Q
    ||||||||||||||||| |||||| |||    | || ||||||||||| ||| ||||||||||||||||||| ||| ||||  ||| ||||||| |||||    
T  24618604 gtgacatagagttgggtgacattggtgac---attgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgatt 24618700  T
Q  762 ggtcaatgtca 772  Q
    |||||| ||||    
T  24618701 ggtcaacgtca 24618711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 755
Target Start/End: Complemental strand, 13043604 - 13043502
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    |||||||||| ||||||||||||||| || | |||| |||    | |||  ||||||||||||||||||||| ||||||||||| ||| ||||  ||| |    
T  13043604 ggtagcatttgggtgacatagagttgagtgatattggtgac---attggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgt 13043508  T
Q  750 gacatt 755  Q
    ||||||    
T  13043507 gacatt 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 777
Target Start/End: Original strand, 551199 - 551280
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaat 777  Q
    ||||||||||||||  ||||||| || ||||||||||| ||| ||||  ||| || |||| ||||||| |||||||| ||||    
T  551199 tggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaat 551280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 685 - 782
Target Start/End: Complemental strand, 8534261 - 8534164
Alignment:
Q  685 gatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| |||||||| ||||| ||||||| ||| ||||| ||||| ||| ||||||||| | ||||| | |||| |||||||||||||||||||    
T  8534261 gatgatgatattggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatgtcac 8534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 650 - 781
Target Start/End: Complemental strand, 6722098 - 6721970
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||| | ||||   |  ||||| ||| |||||||||| |||||||| || ||||||||||| ||| ||||  ||| |    
T  6722098 ggtagcacttgggtgacatagagttggttgacat---tagtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgt 6722002  T
Q  750 gacattctgattggtcaatgtcatcaatgtca 781  Q
    || ||| |||||||||||||||| ||||||||    
T  6722001 gatattgtgattggtcaatgtcaccaatgtca 6721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 772
Target Start/End: Complemental strand, 38933734 - 38933615
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| ||| | |   || |||||| ||| ||||||||||| ||||||||||| ||| ||||  ||| |    
T  38933734 ggtagcacttgggtgacatagagttgggtgacattggtgacgtt---ggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 38933638  T
Q  750 gacattctgattggtcaatgtca 772  Q
    | |||| ||||||||||||||||    
T  38933637 ggcattgtgattggtcaatgtca 38933615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 15011380 - 15011298
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| |||| ||| |||||||||    
T  15011380 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcaccaatgtcac 15011298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 16514524 - 16514442
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  |||||| |||  ||||||| |||||||| |||||||||    
T  16514524 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcaccaatgtcac 16514442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 661 - 772
Target Start/End: Original strand, 6217226 - 6217334
Alignment:
Q  661 ggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgat 760  Q
    |||||||||||||||||| |||||| |||    | ||| ||||||||||  |||||||||| ||||||||||| ||| ||||| ||| || |||| ||||    
T  6217226 ggtgacatagagttgggtgacattggtgac---attggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 6217322  T
Q  761 tggtcaatgtca 772  Q
    ||| ||||||||    
T  6217323 tggccaatgtca 6217334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 2828684 - 2828612
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||| ||||||||    
T  2828684 caatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtca 2828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 772
Target Start/End: Complemental strand, 2894067 - 2893991
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||||| | ||||||||||| ||||||||||| ||||||||  ||| ||| ||| ||||||| ||||||||    
T  2894067 tggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtca 2893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 37961806 - 37961734
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||||||||  |||||||||| ||||||||||| ||| ||||| |||||| |||| |||| |||||||||||    
T  37961806 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtca 37961734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 661 - 762
Target Start/End: Original strand, 14229355 - 14229453
Alignment:
Q  661 ggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgat 760  Q
    |||||||||||||| ||| |||||| |||    | |||||||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||    
T  14229355 ggtgacatagagttcggtgacattggtgac---attggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 14229451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 772
Target Start/End: Original strand, 29925611 - 29925680
Alignment:
Q  703 tcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||||| ||| ||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| ||||||||    
T  29925611 tcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 29925680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 702 - 782
Target Start/End: Original strand, 30734442 - 30734522
Alignment:
Q  702 atcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||| ||||||||||| ||||||| ||| ||| |||| |||||||||||| ||||||| |||||||| |||||||||    
T  30734442 atcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatgtcac 30734522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 661 - 775
Target Start/End: Complemental strand, 50524838 - 50524727
Alignment:
Q  661 ggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgat 760  Q
    ||||||||||||||| || |||||| ||||  ||||   |||||||||| | || |||||| ||||||||||| ||| ||||| ||| ||||||| ||||    
T  50524838 ggtgacatagagttgagtgacattggtgatattagt---caatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgat 50524742  T
Q  761 tggtcaatgtcatca 775  Q
    |||||||||||||||    
T  50524741 tggtcaatgtcatca 50524727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 751
Target Start/End: Complemental strand, 34060297 - 34060234
Alignment:
Q  688 gatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatga 751  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  34060297 gatgatatttgtcaatcacaatatcacaatacttatgaaagagagaaaaacacaaacattatga 34060234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 700 - 782
Target Start/End: Complemental strand, 33689276 - 33689194
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||  |||| |||||||||||||    
T  33689276 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcac 33689194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 772
Target Start/End: Original strand, 47677295 - 47677365
Alignment:
Q  702 atcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| |||||| |||||||||    
T  47677295 atcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtca 47677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 661 - 772
Target Start/End: Original strand, 1801448 - 1801556
Alignment:
Q  661 ggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgat 760  Q
    |||||||||||||||||| |||||| |||    | ||| ||||||||||  |||||||||| ||||||||||| ||| ||||| ||| || |||| ||||    
T  1801448 ggtgacatagagttgggtgacattggtgac---attggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgat 1801544  T
Q  761 tggtcaatgtca 772  Q
    ||| ||||||||    
T  1801545 tggccaatgtca 1801556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 690 - 755
Target Start/End: Original strand, 29031742 - 29031807
Alignment:
Q  690 tgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacatt 755  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||| ||| ||||| ||| |||||||    
T  29031742 tgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatt 29031807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 650 - 733
Target Start/End: Original strand, 45103100 - 45103180
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagaga 733  Q
    ||||||| || |||||||||||||||||| |||||| ||||   | || ||||||||||| ||||||||||| |||||||||||    
T  45103100 ggtagcacttgggtgacatagagttgggtgacattggtgat---attgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 782
Target Start/End: Complemental strand, 18321755 - 18321669
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||||| ||||||||| | ||||| ||||||||| |||||  || ||||||| ||||||  |||||||| |||| ||||    
T  18321755 tggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcaccaatatcac 18321669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 781
Target Start/End: Original strand, 51046110 - 51046192
Alignment:
Q  699 tcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtca 781  Q
    ||||||| ||| |||||||| || ||||||||||| ||| ||||  |||||| |||| ||||||| |||||||| ||||||||    
T  51046110 tcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcaccaatgtca 51046192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 33689179 - 33689235
Alignment:
Q  662 gtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgctt 721  Q
    ||||||||||||||||| |||||||||||   | |||||||||||||| |||||||||||    
T  33689179 gtgacatagagttgggtgacattgatgat---attggtcaatcacaatgtcacaatgctt 33689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 782
Target Start/End: Original strand, 43139744 - 43139829
Alignment:
Q  697 ggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    ||||||||||||| ||| ||||||| ||||||||||| ||| ||||  ||| || |||| | ||||| |||||||| |||||||||    
T  43139744 ggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcac 43139829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Original strand, 30476512 - 30476584
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||  ||| ||||||| ||||||  ||||||||    
T  30476512 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtca 30476584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 47492085 - 47492167
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||||| ||||| ||| ||||  ||| ||||||| ||||||| |||| | | |||||||||    
T  47492085 caatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcac 47492167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 772
Target Start/End: Original strand, 39385749 - 39385798
Alignment:
Q  723 tgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||||||||| ||||||||||||| | ||||| ||||||| ||||||||    
T  39385749 tgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtca 39385798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 696 - 782
Target Start/End: Complemental strand, 41945959 - 41945873
Alignment:
Q  696 tggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||||||| | ||||||||| ||||||||| |||||  |||| ||||||||||| ||||||   |||||||||||||||||    
T  41945959 tggtcaatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattgactaatgtcatcaatgtcac 41945873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 700 - 781
Target Start/End: Complemental strand, 15027642 - 15027561
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtca 781  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||  ||| |||||||||||||||| ||||||||    
T  15027642 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtca 15027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 650 - 772
Target Start/End: Complemental strand, 42628442 - 42628323
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| ||||   | ||| |||||||||| || |||||||| ||||||||||| ||| | ||  ||| |    
T  42628442 ggtagcacttgggtgacatagagttgggtgacattggtgat---attggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgt 42628346  T
Q  750 gacattctgattggtcaatgtca 772  Q
    | |||| ||||||||||||||||    
T  42628345 ggcattgtgattggtcaatgtca 42628323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 782
Target Start/End: Complemental strand, 11017016 - 11016887
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| |||||| |||    | ||  |||||||||| |||||||| || ||||||||||| ||| ||||  ||| |    
T  11017016 ggtagcacttgggtgacatagagttgggtgacattggtgac---attgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgt 11016920  T
Q  750 gacattctgattggtcaatgtcatcaatgtcac 782  Q
    | |||| ||||||| |||||||| |||||||||    
T  11016919 ggcattgtgattggccaatgtcaccaatgtcac 11016887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 772
Target Start/End: Original strand, 27028831 - 27028903
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||| ||||||  ||||||||    
T  27028831 caatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtca 27028903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 782
Target Start/End: Original strand, 41018266 - 41018348
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| || |||||||| ||||||||||| ||| | ||  ||| || |||| |||||||||||||||| |||||||||    
T  41018266 caatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcac 41018348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 772
Target Start/End: Original strand, 7671949 - 7672021
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    ||||||||||  |||||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| ||||||||    
T  7671949 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 7672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 782
Target Start/End: Original strand, 22764753 - 22764820
Alignment:
Q  715 aatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    ||||||| ||||||||||| ||| ||||| ||| ||||||| ||||||| |||| ||| |||||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 712 - 782
Target Start/End: Original strand, 30217504 - 30217574
Alignment:
Q  712 cacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtcatcaatgtcac 782  Q
    |||||||||| ||||||||||| ||| | ||| ||| ||| ||| |||||||  |||||||||||||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtcatcaatgtcac 30217574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 652 - 751
Target Start/End: Original strand, 19115 - 19211
Alignment:
Q  652 tagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatga 751  Q
    ||||||||  ||||||||||||||||| |||||||||||   | || ||||||||||| ||||||||||| || |||| ||| ||| ||||| |||||||    
T  19115 tagcatttgtgtgacatagagttgggtgacattgatgat---attgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacattatga 19211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 63857 - 63785
Alignment:
Q  700 caatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattatgacattctgattggtcaatgtca 772  Q
    |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| || |||| ||||||| ||||||||    
T  63857 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 63785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 772
Target Start/End: Original strand, 49694 - 49813
Alignment:
Q  650 ggtagcatttaggtgacatagagttgggttacattgatgatgatagtggtcaatcacaatatcacaatgcttatgaaagagagaaaaatacaaatattat 749  Q
    ||||||| || |||||||||||||||||| ||||||||||    | ||  |||||||||| ||||||||||| ||||||| ||| ||| ||||  ||| |    
T  49694 ggtagcacttgggtgacatagagttgggtgacattgatgac---attgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgt 49790  T
Q  750 gacattctgattggtcaatgtca 772  Q
    | |||| ||||||| ||||||||    
T  49791 ggcattgtgattggccaatgtca 49813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 49754 - 49721
Alignment:
Q  749 tgacattctgattggtcaatgtcatcaatgtcac 782  Q
    ||||||| ||||||||||||||||||||||||||    
T  49754 tgacattgtgattggtcaatgtcatcaatgtcac 49721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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