View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_low_3 (Length: 729)
Name: NF6676_low_3
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 43186521 - 43186836
Alignment:
| Q |
16 |
tcacactatgacaattaggccccacttggatctttggacaatgccacttgaatcttaactat-aggaatccacaacactcattttcattccatcttcgaa |
114 |
Q |
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| T |
43186521 |
tcacactatgacaattaggccccacttgcatctttggacaatgccacttgaatcttaacttttaggaatccacaacactcattttcattccatcttcgaa |
43186620 |
T |
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| Q |
115 |
attcactctgactcgttcttcataacataaattcattcattttcattattcatcgccgaaattcatccggactcgttattaaccaatatatttttatact |
214 |
Q |
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| T |
43186621 |
attcactctgactcgttcttcataacataaattcattaattttcattattcatcgcagaaattcatccggactcgttattaaccaatatatttttatact |
43186720 |
T |
|
| Q |
215 |
aaaataatcaaacattaaaaaggatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatg |
314 |
Q |
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| T |
43186721 |
aacataatcaaacattaaaaagcatcttggactgtgtcttaccatgagaaacaaaacattgttatcatacgacccgattaagaatattgttttaactatg |
43186820 |
T |
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| Q |
315 |
ttactatattctgatt |
330 |
Q |
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|||||||||||||||| |
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| T |
43186821 |
ttactatattctgatt |
43186836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 460 - 729
Target Start/End: Original strand, 43187860 - 43188129
Alignment:
| Q |
460 |
ttctgctatttgagtagtttaattgcggtttgagtggtttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
559 |
Q |
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| T |
43187860 |
ttctgttatttgattagtttaattgcggtttgagtgatttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
43187959 |
T |
|
| Q |
560 |
gcaattaattgaattcatattgtgacctccactgatatctttcaattcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
659 |
Q |
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| T |
43187960 |
gcaattaattgaattcatattgtgacctccactgatatctttcagttcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
43188059 |
T |
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| Q |
660 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaggcatttagtgactcttactgagc |
729 |
Q |
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| T |
43188060 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttattgagc |
43188129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 326 - 460
Target Start/End: Original strand, 43187115 - 43187248
Alignment:
| Q |
326 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccaatcaacggaatagagaagggaatcaagtgtgtttttgattg |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43187115 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccgatcaatggaatagagaagggaatcaagtgtgtttttgattg |
43187214 |
T |
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| Q |
426 |
agtttgaattctcatgactgtgtaaatctgtgttt |
460 |
Q |
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| T |
43187215 |
agtttgaattctcatgactgtgt-aatctgtgttt |
43187248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 584
Target Start/End: Original strand, 22710090 - 22710133
Alignment:
| Q |
541 |
gttcagtctttaaaacactgcaattaattgaattcatattgtga |
584 |
Q |
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| T |
22710090 |
gttcagtctttaaaacactgcaattaattgaagtcatattgtga |
22710133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
69 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
125 |
Q |
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||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
77 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
137 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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