View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_low_5 (Length: 517)
Name: NF6676_low_5
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 5896347 - 5896628
Alignment:
| Q |
1 |
aatttcattgattaatgaattaaccgagaactacatcctagttctctcgttgaaacaaagagttattcacaagatatctaattgggagcaaaacaaaatt |
100 |
Q |
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| T |
5896347 |
aatttcattgattaatgaattaaccgagaactacatcctagttctcttgttgaaacaaagagttattcacaagatatctaattgggagcaaaacaaaatt |
5896446 |
T |
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| Q |
101 |
acaaacacaaattagagcacttttttatacataatgccctagaagaagaaaataaaaccgagtaaaactggattaattactaggatcccttctgcttaat |
200 |
Q |
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| T |
5896447 |
acaaacacaaattagagcacttttttatacataatgccctagaagaaagaaaaaaaactgagtaaaactgg----atgactaggatcccttctgcttaat |
5896542 |
T |
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| Q |
201 |
tggatcactttttgttaattccagttgcattcttcacagcttcagcagccccttgtgctgatgccatcacctgctgaccagcctac |
286 |
Q |
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| T |
5896543 |
tggatcactttttgttaattccagttgcattcttcacagcttcagcagccccttgtgctgatgccatcacctgctgaccagcctac |
5896628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 356 - 502
Target Start/End: Original strand, 5896689 - 5896835
Alignment:
| Q |
356 |
caaagcattcaagttgatgaaatgaaaattccaaccccttgcacggtttcttttgcggattgagcagcattgctagccatgtccgccaagttgctagact |
455 |
Q |
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| T |
5896689 |
caaagcattcaagttgatgaaatgaaaattccaaccccttgcacggtttcttttgcggattgagcagcattgctagccatgtccgccaagttgctagact |
5896788 |
T |
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| Q |
456 |
tctcctgaaatttatagtatagagatcatataaaattctttgtaatt |
502 |
Q |
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| T |
5896789 |
tctcctgaaatttatagtatagagatcatataaaattctttgtaatt |
5896835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 410 - 503
Target Start/End: Original strand, 5897120 - 5897213
Alignment:
| Q |
410 |
gcggattgagcagcattgctagccatgtccgccaagttgctagacttctcctgaaatttatagtatagagatcatataaaattctttgtaattg |
503 |
Q |
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| T |
5897120 |
gcggactgagcagcattgctagccatgtccgtcaagttgctagacttctcctgaaattcatagtatagagatcatataaaaaattttgtaattg |
5897213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 6272471 - 6272529
Alignment:
| Q |
403 |
ttcttttgcggattgagcagcattgctagccatgtccgccaagttgctagacttctcct |
461 |
Q |
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| T |
6272471 |
ttctttggcagattgagcagcattgctagccttgtcggtcaagttgctagccttttcct |
6272529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 6282467 - 6282417
Alignment:
| Q |
388 |
aaccccttgcacggtttcttttgcggattgagcagcattgctagccatgtc |
438 |
Q |
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| T |
6282467 |
aacctcttgaacggattcttttgcagattgagcagcattgctagccttgtc |
6282417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Complemental strand, 6251257 - 6251224
Alignment:
| Q |
400 |
ggtttcttttgcggattgagcagcattgctagcc |
433 |
Q |
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| T |
6251257 |
ggtttcctttgcggattgagcagcattgctagcc |
6251224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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