View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6676_low_9 (Length: 300)
Name: NF6676_low_9
Description: NF6676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6676_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 944996 - 945271
Alignment:
| Q |
18 |
aggccaattccatacataatagtagaaaggaaattgtgataacactataatagccaaaacaattcccattacactatgctagaaaaaatggatcctgttt |
117 |
Q |
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| T |
944996 |
aggccaattccatacataatagtagaaaggaaattgtgataacactataatagccaaaacaattcccattacactatgctagaaaaaatgtatcttgttt |
945095 |
T |
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| Q |
118 |
tttgttgattgtgtttcaattatggcatttgcttttgattttgatccttcctagaaaagagggtcacagatctttagttcactcttaagccactgattta |
217 |
Q |
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| T |
945096 |
tttgttgattgtgtttcaattatggaatttgcttttgattatgatccttcctagaaaagagggtcacagatctttagttcactcttaagccactgattta |
945195 |
T |
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| Q |
218 |
ttgacaaaaacatataacattaaatatgacatttttgtatnnnnnnncattaaaaatgatattttgacagtataat |
293 |
Q |
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| T |
945196 |
ttgacaaaaccatataacattaaatatgacatttttgtataaaaaaacattaaaaatgatattttgacagtataat |
945271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 945546 - 945435
Alignment:
| Q |
125 |
attgtgtttcaattatggcatttgcttttgattttgatccttcctagaaaagagggtcacagatctttagttcactcttaagccactgatttattgacaa |
224 |
Q |
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| T |
945546 |
attgtgttttaattatggcattttcttttgattttgatccctcaaagaatagagggtcacaactcttcagcccactctttagccattgatcttctaacac |
945447 |
T |
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| Q |
225 |
aaacatataaca |
236 |
Q |
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| T |
945446 |
aaacatataaca |
945435 |
T |
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