View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_high_1 (Length: 961)
Name: NF6677_2D_high_1
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 559 - 819
Target Start/End: Complemental strand, 8432234 - 8431974
Alignment:
| Q |
559 |
tcacttccacctaatggatttatgtgaagctttcattgtagtaggataaaaattaaggaaaactgaacaaaatgcagcaaatatgatctatgatgtagga |
658 |
Q |
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| T |
8432234 |
tcacttccacctaatggatttatgtgaaactttcattgtagtaggataaaaattaaggaaaactaaacaaaatgcagcaaatatgatctatgatgtagga |
8432135 |
T |
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| Q |
659 |
aaatcaatactatatcattggcagnnnnnnncttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatat |
758 |
Q |
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| T |
8432134 |
aaatcaatactatatcattggtagtttttttcttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatat |
8432035 |
T |
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| Q |
759 |
tacatgacttgatctatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
819 |
Q |
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| T |
8432034 |
tacatgaattgatatatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
8431974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 8433313 - 8433197
Alignment:
| Q |
325 |
atatggatgcaaactttatgatgaaatggttattgacttacgaaaaaatagatacattaaacaaaactaccttagggctcctaggagtcgtagattacag |
424 |
Q |
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| T |
8433313 |
atatggatgcaaactttatgatgaaatggttattgacttacgaaaaaatagatacattaaacaaaactaccttagtgctcctaggagtcgtagatt---g |
8433217 |
T |
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| Q |
425 |
atattaaatgtgagaggaat |
444 |
Q |
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| T |
8433216 |
atattaaatgtgagaggaat |
8433197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 8433061 - 8432966
Alignment:
| Q |
458 |
atgatatttggaatatattcatcgagaaaaatccgacaaaatcatatatgttatcatttggcttcaaatcttagaagaaaaagaacaaataatcat |
553 |
Q |
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| T |
8433061 |
atgatatttggaatatattcattgagaacaatccgacaaaatcatatatgttatcatttggcttcaaatcttagaagaaaaagaacaaataatcat |
8432966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 691 - 760
Target Start/End: Complemental strand, 8437663 - 8437594
Alignment:
| Q |
691 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
760 |
Q |
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| T |
8437663 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8437594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 691 - 760
Target Start/End: Complemental strand, 8440888 - 8440819
Alignment:
| Q |
691 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
760 |
Q |
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| T |
8440888 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8440819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 908 - 952
Target Start/End: Complemental strand, 8431362 - 8431318
Alignment:
| Q |
908 |
aagttgcatgcatatttaccttaatcgatgtatgatgtccatctc |
952 |
Q |
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| T |
8431362 |
aagttgcatgcatatttaccttaatcgatgtatgatgtcaatctc |
8431318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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