View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_high_6 (Length: 332)
Name: NF6677_2D_high_6
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 24764908 - 24764615
Alignment:
| Q |
1 |
actaccaaatatgttactatatccttttacactatcactgggtagcactttaataaatgttacagataaaatgagtactagttgctcttatcaaaagatt |
100 |
Q |
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| T |
24764908 |
actaccaaatatgttactatatccttttacactatcacctggtagcactttaataaatgttaaaaataaaatgagtactagttgctcttatcaaaagatt |
24764809 |
T |
|
| Q |
101 |
tggattagtgaaagattaaatatcgaccttaccatctccctagtgcccttccagtttaaatttattcttggatcagttaaatcagtggcaacacttggtc |
200 |
Q |
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| T |
24764808 |
tggattagcgaaagattaaatatcgaccttaccatctccctagtgcccttccagtttaaatttattcttggatcagttaaatcagtggcaacacttggtc |
24764709 |
T |
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| Q |
201 |
aaaacaagtgacatataataagaataagtcataaaatggtttcttaatcaatgcaaataatttgatttgcatgctaatattttgttagggagtt |
294 |
Q |
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| T |
24764708 |
aaaacaagtgacatataataagaataagtcataaaatggtttcttaatcaatgcaaataatttgatttgcatgctaatattttgttagggagtt |
24764615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 24748852 - 24748781
Alignment:
| Q |
36 |
cactgggtagcactttaataaatgttacagataaaatgagtactagttgctcttatcaaaagatttggatta |
107 |
Q |
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|||||||| |||||| |||||||||| || | ||||||||||| |||| ||||||||||||||||| |||| |
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| T |
24748852 |
cactgggtggcacttgaataaatgttccataaaaaatgagtacaagtttttcttatcaaaagatttgaatta |
24748781 |
T |
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