View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6677_2D_low_11 (Length: 394)
Name: NF6677_2D_low_11
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 150 - 374
Target Start/End: Complemental strand, 50420412 - 50420188
Alignment:
| Q |
150 |
ccattctattttgataaaatgagacaaatgtaacacttggtcattccatgcatcatttcatctcaagagaatttgtggcctcaaccacatagcctaaaaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50420412 |
ccattctattttgataaaatgagacaaatgtaacacttggtcattccatgcatcatttcatcttaagagaatttgtggcctcaaccacatagcctaaaaa |
50420313 |
T |
|
| Q |
250 |
tggaacttccataattgacctaaatttattgatggtttacaaatttgatggattcttcaaactttgttctcatgttgtgagctatgaagcattgacaggg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50420312 |
tggaacttccataattgacctaaatttattgatggtttacaaatttgatggattcttcaaactttgttctcatgttgtgagctatgaagcattgacaggg |
50420213 |
T |
|
| Q |
350 |
aaaacatatacaacactaacacatt |
374 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50420212 |
aaaacatatacaacactaacacatt |
50420188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 50420561 - 50420443
Alignment:
| Q |
1 |
cagaaaagttatagatctatgatgatggtaatgtaacaggagcaaaaagagaaaatgtaagagatgtaaaattaatgtcctattcaaagtaatccatccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50420561 |
cagaaaagttatagatctatgatgatggtaatgtaacaggagcaaaaagagaaaatgtaagagatgtaaaattaatgtccaattcaaagtaatccatccg |
50420462 |
T |
|
| Q |
101 |
tgtcagccttcaaaaagga |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50420461 |
tgtcagccttcaaaaagga |
50420443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University