View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_low_17 (Length: 311)
Name: NF6677_2D_low_17
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 4015229 - 4015339
Alignment:
| Q |
185 |
ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4015229 |
ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttc |
4015328 |
T |
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| Q |
285 |
acatctgatgt |
295 |
Q |
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||||||||||| |
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| T |
4015329 |
acatctgatgt |
4015339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 4570741 - 4570658
Alignment:
| Q |
185 |
ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacc |
268 |
Q |
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| T |
4570741 |
ccagttcacagtgccactcaaatacacaggtttgtggccaagaacagtaggaaaactttcaatatttctccaaacatcatcacc |
4570658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 21855725 - 21855786
Alignment:
| Q |
230 |
aacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatctg |
291 |
Q |
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| T |
21855725 |
aacaggaaaactttcgatgtttctccaaacatcatcacccatgttgataactctcacctctg |
21855786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 4017083 - 4017139
Alignment:
| Q |
236 |
aaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatctga |
292 |
Q |
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| T |
4017083 |
aaaactgtcaatatttctccaaacatcatcacccaaattgagaactttcacctctga |
4017139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 21855829 - 21855869
Alignment:
| Q |
18 |
ctttataagttccggttgaattatcgcatccaaaggcaaag |
58 |
Q |
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| T |
21855829 |
ctttataagttccggttgaattatcacatccaaaggcaaag |
21855869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4015366 - 4015406
Alignment:
| Q |
18 |
ctttataagttccggttgaattatcgcatccaaaggcaaag |
58 |
Q |
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| T |
4015366 |
ctttataagctccagttgaattatcacatccaaaggcaaag |
4015406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 24331241 - 24331302
Alignment:
| Q |
230 |
aacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatctg |
291 |
Q |
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||||||||||||||| |||||||||||||||||| |||||| ||||| |||| |||| |||| |
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| T |
24331241 |
aacaggaaaactttcgatgtttctccaaacatcatcacccatgttgataactctcacctctg |
24331302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 24331345 - 24331385
Alignment:
| Q |
18 |
ctttataagttccggttgaattatcgcatccaaaggcaaag |
58 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24331345 |
ctttataagttccggttgaattatcacatccaaaggcaaag |
24331385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 29866968 - 29866911
Alignment:
| Q |
232 |
caggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatc |
289 |
Q |
| |
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|||||||||||||||| ||||||||| |||| |||| || ||||||||| ||||||| |
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| T |
29866968 |
caggaaaactttcaatatttctccaacgatcatcaccgaaattgagaactctcacatc |
29866911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 29880984 - 29880931
Alignment:
| Q |
233 |
aggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcac |
286 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||| | ||||||||| |||| |
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| T |
29880984 |
aggaaaactttcaatatttctccaaacatcatcaccaagattgagaactctcac |
29880931 |
T |
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