View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_low_19 (Length: 294)
Name: NF6677_2D_low_19
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 20989541 - 20989265
Alignment:
| Q |
17 |
cattttgtactaaatagtgtgtctcggagcaatagcagtttatctaaattccgctatactaaagtagtatattgctgctatagcctctatttaacaacat |
116 |
Q |
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| T |
20989541 |
cattttgtactaaatagtgtgtctcggagcaatagcagtttatctaaattccgctatactaaagtagtatatcgctgctatagcctctatttaacaacat |
20989442 |
T |
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| Q |
117 |
taaccatttactaaattgtagtaagtgatatcaatggcggatgacagaaagccaaaaatccagcatagacaccttagtactgccgtcctttcacaaatag |
216 |
Q |
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| T |
20989441 |
taaccatttactaaattgtagtaagtgatatcaatggcggatgacagaaagccaaaaatccagcatagacaccatagtactgccgtcctttcacaaatag |
20989342 |
T |
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| Q |
217 |
accatgacattgtcnnnnnnnntccgtcaccgctatccttcatggccaatatttagcaacactgacagtattatcta |
293 |
Q |
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| T |
20989341 |
accgtgacattgtcaaaaaaaatccgtcaccgctatccttcatggccaatatttagcaacactgacagtataatcta |
20989265 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31694734 - 31694785
Alignment:
| Q |
17 |
cattttgtactaaatagtgtgtctcggagcaatagcagtttatctaaattcc |
68 |
Q |
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| T |
31694734 |
cattttgtactaaatagtgtatcacagaacaatagcagtttgtctaaattcc |
31694785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 43307734 - 43307800
Alignment:
| Q |
46 |
caatagcagtttatctaaattccgctatactaaagtagtatattgctgctatagcctctatttaaca |
112 |
Q |
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| T |
43307734 |
caatagctgtgtatccaaattccgctacactatagtggtatagtgctgctatagctgctatttaaca |
43307800 |
T |
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