View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6677_2D_low_21 (Length: 242)
Name: NF6677_2D_low_21
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9333575 - 9333790
Alignment:
| Q |
18 |
tcttgcacaacattatggaactttcatttgccatttttacgtcaaaacttctgt-gtaatactttacttctaaagatcaacctgctaagttgaataattg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9333575 |
tcttgcacaacattatggaactttcatttgccagttttacgtcaaaacttctgttgtaatactttacttctaaagatcaacctgctaagttgaataattg |
9333674 |
T |
|
| Q |
117 |
aaataaaatgaaacttgaaaaattgtctgttaagtggatgaattgaaagcataagcatctacttgagcaaataaatcaaaaccaaacgttattcaatatg |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
9333675 |
aaataaaatgaaacttggaaaattgtctgttaagtggatgaattgaaagcataagcatctacttgagcaaataaatcaaaaccaaactttattcaaaatg |
9333774 |
T |
|
| Q |
217 |
acttgaaattaaacac |
232 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9333775 |
acttgaaattaaacac |
9333790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 9331058 - 9331164
Alignment:
| Q |
18 |
tcttgcacaacattatggaactttcatttgccatttttacgtcaaaacttctg-tgtaatactttacttctaaagatcaacctgctaagttgaataattg |
116 |
Q |
| |
|
||||||| || ||||||||||||| |||| | ||||||||| ||||||| || ||||| ||||||||| | |||||||| ||||| |||||||| || |
|
|
| T |
9331058 |
tcttgcaaaaaattatggaactttaattttgcctttttacgttaaaacttttgttgtaa-actttactttcagagatcaacttgctatgttgaatagtta |
9331156 |
T |
|
| Q |
117 |
aaataaaa |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
9331157 |
aaataaaa |
9331164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University