View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_low_23 (Length: 240)
Name: NF6677_2D_low_23
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17881364 - 17881139
Alignment:
| Q |
1 |
taaaatctttcaattttgatgtctattttacgacttgcgattttgacaaccatgatcttgactaaattgtaattgtagtttctctttaattgtatttaaa |
100 |
Q |
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| T |
17881364 |
taaaatctttcaattttgattgcgattttacgacttgcgattttgacaaccatggtcttgactaaattgtaattgtagtttctctttaactgtatttaaa |
17881265 |
T |
|
| Q |
101 |
ttgttttattggtgccaaattctttccctttctca---tcatgtaaaggtagcaatttgtaatgcctattctatcacttgggcctatttgggtcattaaa |
197 |
Q |
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| T |
17881264 |
ttgttttattcgtgccaaattctttccctttctcatcatcatgtaaaggcagcaatttgtaatgcctattctatcacttgggcctatttgggtcattaca |
17881165 |
T |
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| Q |
198 |
caattattcaaaacattaataatgat |
223 |
Q |
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|||||||||||||||||||||||||| |
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| T |
17881164 |
caattattcaaaacattaataatgat |
17881139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 28383708 - 28383823
Alignment:
| Q |
109 |
ttggtgccaaattctttcccttt-ctcatcatgtaaaggtagcaatttgtaatgcctattctatcacttgggcctatttgggtcattaaacaattattca |
207 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || |||| | || || ||||| || || |||||||||||||||||| |||||||| | |
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| T |
28383708 |
ttggtgccaaattctttcccttttctcatcatgtaaaggcagaaattggcaaagcttattccataacaatggcctatttgggtcattacgcaattattaa |
28383807 |
T |
|
| Q |
208 |
aaacattaataatgat |
223 |
Q |
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||||||||| |||||| |
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| T |
28383808 |
aaacattaacaatgat |
28383823 |
T |
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