View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_low_27 (Length: 206)
Name: NF6677_2D_low_27
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 40533586 - 40533462
Alignment:
| Q |
69 |
ccacgccagtgggatcaggtagtgaatgtgcaaaatcaatagtgaatggtacattgaggggagatagatacttgactgcaccagcttggtttagaatgac |
168 |
Q |
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| T |
40533586 |
ccacgccagtgggatcagttagtgaatgtgcaaaatcaatagtgaatggtacattgaggggagatagatacttgactgcaccagcttggtttagaatgac |
40533487 |
T |
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| Q |
169 |
atatgttgtgaaagtgtgatgtcca |
193 |
Q |
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| T |
40533486 |
atatgttgtgaaagtgttatgtcca |
40533462 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 40533637 - 40533703
Alignment:
| Q |
6 |
tattactaggtaaattaaattaagatgagattgaaaatttggttacatctctcatatcttggtccacgcc |
75 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40533637 |
tattactaggtaaattaaa---agatgagattgaaaatttggttacatctctcatatcttggtccacgcc |
40533703 |
T |
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