View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6677_2D_low_4 (Length: 686)

Name: NF6677_2D_low_4
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6677_2D_low_4
NF6677_2D_low_4
[»] chr5 (1 HSPs)
chr5 (1-667)||(42154345-42154992)


Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Complemental strand, 42154992 - 42154345
Alignment:
Q  1 gaaaaggtatgctagagtatttgattcttccaagctctatttatgagataaattacaatacctttataattactcgatacttggtatttttctatcttta 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  42154992 gaaaaggtatgctagagtatttgat-cttccaagctctatttatgagataaattacaatacctttataattacttgatacttagtatttttctatcttta 42154894  T
Q  101 gcaattcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttcttttgtaa--tttataa-ccaaaaatatgaaatggtgtcaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  || | || ||||||||||||| |||||||||    
T  42154893 gcaattcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttctttttaaaagttcacaaaccaaaaatatgaa-tggtgtcaa 42154795  T
Q  198 tctttactagtccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaattactatagtactattatgca 297  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  42154794 tcttttctagcccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaattact---------------- 42154711  T
Q  298 tcactaataacaaaattgactaaaggaaattcttgaagattgaaagggaataggat-accttgtttctccactatttctctgctgttcaatatcagaaag 396  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42154710 -----aataacaaaattgactaaaggaaattcttgaagattgaaagggaataggattaccttgtttctccactatttctctgctgttcaatatcagaaag 42154616  T
Q  397 gcttagagcatctccttgaatcagataaatttgtcggtatcgaccatacacagtaagcaaattaagaacacatccaatatcataaccagatatccaaatc 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42154615 gcttagagcatctccttgaatcagataaatttgtcggtatcgaccgtacacggtaagcaaattaagaacacatccaatatcataaccagatatccaaatc 42154516  T
Q  497 ctcataggccaaacaggtttctccctctttgaaataaccaaagtgaaagttgaaatgattatttggacaatcaaagcaataaactccatcatcaaccatg 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  42154515 ctcataggccaaacaggtttctccctctttgaaataaccaaagtgaaagttgaaatgattatttggataatcaaagcaataaattccatcatcaaccatg 42154416  T
Q  597 tgctagaattaaaaggattagagccaaggttagaccttgatccattttgataatggaaaactcttcttaac 667  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42154415 tgctagaattgaaaggattagagccaaggttagaccttgatccattttgataatggaaaactcttcttaac 42154345  T

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