View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_2D_low_6 (Length: 467)
Name: NF6677_2D_low_6
Description: NF6677_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_2D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 166 - 446
Target Start/End: Original strand, 17881512 - 17881783
Alignment:
| Q |
166 |
aaattgtctcttctcttcatgattttggggagttaaattttcccttcctatcttacgtattaaggatatattttcttgaagcaaacatatgaaggattta |
265 |
Q |
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| T |
17881512 |
aaattgtctcttctcttcatgattttggggagttaaatttt----tccaa----acatatgaaggatatattttcttgaagcaaacatatgaaggattta |
17881603 |
T |
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| Q |
266 |
tatcatgccattgtcaactctaaattgtttatacagtgcattcattttctataactattaattaagacaaaacattgttttggtgtagccttttttactt |
365 |
Q |
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| T |
17881604 |
tatcatgccattgtcaactctaagttgtttatacagtgcattcatcttctataactattaattaaggaaaaacattgttttgctgtagcgttttttactt |
17881703 |
T |
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| Q |
366 |
tccaagaatacctttcattttcttcttcaactttaattttcatctagacattttgatgataaggactggtagtaaccgctt |
446 |
Q |
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| T |
17881704 |
tccaagaataccttt-attttattcttcaattttaattttaatttacacaatttgatgatatggaccggtaataacagctt |
17881783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 17881345 - 17881387
Alignment:
| Q |
20 |
atcaaaattgaaagattttactcgtgaaagatctcataaatag |
62 |
Q |
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| T |
17881345 |
atcaaaattgaaagattttactcctataagatctcataaatag |
17881387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 22928110 - 22928167
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagccttttttactttccaa |
370 |
Q |
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| T |
22928110 |
tctatacctattaataaagacaaaacatgtgtttggtgtagccttttttccattccaa |
22928167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 29642493 - 29642445
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagcctttttt |
361 |
Q |
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| T |
29642493 |
tctatacctattaataaagacaatacatgtttttggtgtagcctttttt |
29642445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 19703202 - 19703253
Alignment:
| Q |
316 |
ataactattaattaagacaaaacattgttttggtgtagccttttttactttc |
367 |
Q |
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| T |
19703202 |
ataactatttataaagacaaaacattgttttggtgtggccttttttactttc |
19703253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 14600278 - 14600326
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagcctttttt |
361 |
Q |
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| T |
14600278 |
tctataactattaataaagggaaaacattgttttggtgtagcctttttt |
14600326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 2661681 - 2661738
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagccttttttactttccaa |
370 |
Q |
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||||||||||||||| ||| ||||| ||||| |||||||||||||||| | |||||| |
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| T |
2661681 |
tctataactattaataaagggaaaactttgttgtggtgtagcctttttttcattccaa |
2661738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 31872984 - 31873036
Alignment:
| Q |
309 |
attttctataactattaattaagacaaaacattgttttggtgtagcctttttt |
361 |
Q |
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| T |
31872984 |
attttctataactattaataaaggaaaaacatggatttggtgtagcctatttt |
31873036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 369
Target Start/End: Complemental strand, 54079325 - 54079262
Alignment:
| Q |
306 |
ttcattttctataactattaattaagacaaaacattgttttggtgtagccttttttactttcca |
369 |
Q |
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| T |
54079325 |
ttcattatctatatctattaataaagacaatacatttatttggtgtagcctattttactttcca |
54079262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 2704386 - 2704434
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagcctttttt |
361 |
Q |
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| T |
2704386 |
tctataactattaataaaggcaaaacattagtttggtgtagcctttttt |
2704434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 23463792 - 23463744
Alignment:
| Q |
313 |
tctataactattaattaagacaaaacattgttttggtgtagcctttttt |
361 |
Q |
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|||||| |||||||| ||| ||| || |||||||||||||||||||||| |
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| T |
23463792 |
tctatacctattaataaaggcaatactttgttttggtgtagcctttttt |
23463744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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