View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6677_high_2 (Length: 761)

Name: NF6677_high_2
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6677_high_2
NF6677_high_2
[»] chr8 (5 HSPs)
chr8 (1-685)||(4903301-4903987)
chr8 (685-745)||(9336312-9336372)
chr8 (144-303)||(1557161-1557320)
chr8 (557-664)||(1556798-1556905)
chr8 (410-477)||(1556987-1557054)
[»] chr7 (3 HSPs)
chr7 (1-685)||(22153570-22154235)
chr7 (1-685)||(22209485-22210150)
chr7 (229-278)||(41450779-41450828)
[»] chr4 (4 HSPs)
chr4 (129-617)||(53561813-53562303)
chr4 (416-616)||(34821645-34821847)
chr4 (1-311)||(38185274-38185584)
chr4 (129-309)||(34821358-34821538)
[»] chr3 (1 HSPs)
chr3 (61-95)||(43073753-43073787)


Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 4903987 - 4903301
Alignment:
Q  1 caacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4903987 caacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacaccttaacagat 4903888  T
Q  101 tccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccac 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903887 tccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccac 4903788  T
Q  201 ccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataag 300  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903787 ccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataag 4903688  T
Q  301 cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt 400  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903687 cttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt 4903588  T
Q  401 gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  4903587 gggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttcc 4903488  T
Q  499 aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc 598  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903487 aaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc 4903388  T
Q  599 ttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 685  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903387 ttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 4903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 685 - 745
Target Start/End: Original strand, 9336312 - 9336372
Alignment:
Q  685 agtccctggtataagtatacgtgtcatgtattcattattgagggatatttggttaggatat 745  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9336312 agtctctggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggatat 9336372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 1557320 - 1557161
Alignment:
Q  144 tgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattc 243  Q
    |||||||||| |||||||||||  ||||||| |  ||||||||||| |  ||  ||||| | || | ||||||||| | ||   | ||| ||||||||||    
T  1557320 tgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatctttttattgacaacagctccaatccaacattc 1557221  T
Q  244 ccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagctt 303  Q
    |||||||||||||||||| || || |||||||||||||| |||| ||| |||||||||||    
T  1557220 ccacataataaacagatttggggggattaaaaaattaaagtccagccagtccataagctt 1557161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 664
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
Q  557 tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc 656  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||  |||||| |||| |||| ||  | ||  |||| ||||||    
T  1556905 tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc 1556806  T
Q  657 aaatcctc 664  Q
    ||||||||    
T  1556805 aaatcctc 1556798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
Q  410 tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac 477  Q
    ||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||    
T  1557054 tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac 1556987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Original strand, 22153570 - 22154235
Alignment:
Q  1 caacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22153570 caacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacaccttaaaagat 22153669  T
Q  101 tccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccac 200  Q
    ||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22153670 tccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatctaccac 22153769  T
Q  201 ccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataag 300  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  22153770 cccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactccataag 22153869  T
Q  301 cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  22153870 cttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggt 22153969  T
Q  401 gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc 498  Q
    ||||||||||| |||||||||||||||||||||||||||||||                     ||||||||| ||||| |||||  |||||||||||||    
T  22153970 gggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttcc 22154048  T
Q  499 aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc 598  Q
    |||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||  || ||||||||    
T  22154049 aaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcacc 22154148  T
Q  599 ttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 685  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||| |||||||||||    
T  22154149 ttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtgaagaagtaa 22154235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Original strand, 22209485 - 22210150
Alignment:
Q  1 caacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22209485 caacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacaccttaaaagat 22209584  T
Q  101 tccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccac 200  Q
    ||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22209585 tccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatctaccac 22209684  T
Q  201 ccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataag 300  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  22209685 cccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactccataag 22209784  T
Q  301 cttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggt 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  22209785 cttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaacacactgaagagagctatccggt 22209884  T
Q  401 gggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttcc 498  Q
    ||||||||||| |||||||||||||||||||||||||||||||                     ||||||||| ||||| |||||  |||||||||||||    
T  22209885 gggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcacttccgacggtgccgggctcttcc 22209963  T
Q  499 aaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcacc 598  Q
    |||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||  || ||||||||    
T  22209964 aaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcacc 22210063  T
Q  599 ttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa 685  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||| |||||||||||    
T  22210064 ttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtgaagaagtaa 22210150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 41450828 - 41450779
Alignment:
Q  229 accattccaacattcccacataataaacagattaggaggaattaaaaaat 278  Q
    |||||||||||||| ||| | |||||||| ||| ||||||||||||||||    
T  41450828 accattccaacattgccaaagaataaacaaatttggaggaattaaaaaat 41450779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 129 - 617
Target Start/End: Complemental strand, 53562303 - 53561813
Alignment:
Q  129 cattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactc 228  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||  ||||||||||||| | |||| ||||  | ||   ||| ||||| ||||   |    
T  53562303 cattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattctaacacctttacgggtcttattatttaaaacagc 53562204  T
Q  229 accattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcg 328  Q
     ||||||||||||||||||| |||||| ||||| || ||||||| ||||||||| |||||||| ||||| | ||||| ||| |||      ||||||||     
T  53562203 tccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttca 53562104  T
Q  329 caatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttga 428  Q
    ||||||||||| | ||| |  | |||||||  ||  ||||| ||||| |||||||    |||  ||||||||||||   | || || ||||| || || |    
T  53562103 caatgaagaaataaatgagtagcatcttcagccgtgttattacaccacacacactcataagatgtatccggtgggaaacaattcctaatagctagattaa 53562004  T
Q  429 tctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacggc--cgggctcttccaaatatgcgagaaaaccctcctcgggag 526  Q
    |||| || || ||||||||||| || |||||||| |  || || || || || ||||||  ||| |||||||||||||||   || |||||||||   ||    
T  53562003 tcttcgtaggaattctatcatggaggagtttccacgagaagacaacgaccttggacggcgccggactcttccaaatatgcttaaacaccctcctctctag 53561904  T
Q  527 accatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaa 617  Q
      ||||||| |  || ||||| | |||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| ||||||    
T  53561903 ttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaa 53561813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 616
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
Q  416 atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa 513  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || |  ||||  ||||||| ||| ||||  || |    
T  34821645 atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca 34821744  T
Q  514 ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct 613  Q
    ||||||||     | | | ||||   ||  ||   | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||    
T  34821745 ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct 34821844  T
Q  614 cca 616  Q
    |||    
T  34821845 cca 34821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 38185274 - 38185584
Alignment:
Q  1 caacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagat 100  Q
    |||||| || ||||||||||||||||||||||| ||||||||||| ||     | || |  ||||| ||| |||||||||| | ||||||||||| ||||    
T  38185274 caacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacaccttaatagat 38185373  T
Q  101 tccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccac 200  Q
    |||| |||  ||||   |||   |||  |||| || ||| || | |||||||| |||||||| || |||||||| || ||||||||||| |  ||  | |    
T  38185374 tccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataagcctcactc 38185473  T
Q  201 ccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataag 300  Q
    || | |  | |||||||||  ||| | | | |||||||||||||||| | ||||||||||| || ||||||| |||||| ||||||| ||||||||||||    
T  38185474 ccttacaaatctttttattataaaccgctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccataag 38185573  T
Q  301 cttactccaga 311  Q
    || || |||||    
T  38185574 ctcacgccaga 38185584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 34821358 - 34821538
Alignment:
Q  129 cattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactc 228  Q
    ||||||| |||||  | ||||||||||||||||| || |||||||| || || |||||||| |  ||  | ||| | || | |||||||||   || | |    
T  34821358 cattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagcctcactcccttacgaatctttttattgtgaaccgc 34821457  T
Q  229 accattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactcca 309  Q
    |||||||||||| | |||||| ||||||| ||| ||||| |||| || |||||  || ||||||||||| |||||||||||    
T  34821458 accattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccactccatgagcttactcca 34821538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
Q  61 cctacccaaaaaccacctccaagacaacaccttaa 95  Q
    ||||||||| |||||||||||||||||||||||||    
T  43073753 cctacccaacaaccacctccaagacaacaccttaa 43073787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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