View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_high_3 (Length: 599)
Name: NF6677_high_3
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 98 - 282
Target Start/End: Original strand, 50626006 - 50626190
Alignment:
| Q |
98 |
gcattatataacaatctaactatcccgcaaaaataattgttaaattttatttttggttacttaaaaagggtcggaacttcgcaggaggtcacccatccaa |
197 |
Q |
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| T |
50626006 |
gcattatataacaatctaactattccgcaaaaataattgttaaattttatttttggttacttaaaaagggtcggaacttcgcaggaggtcacccatctta |
50626105 |
T |
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| Q |
198 |
ataatatactctcgtccaaacacacttaactacgaaattgtgatggaattcgatgcattagtactagtatgatcacacctataat |
282 |
Q |
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| T |
50626106 |
ataatatactctcgtccaaacacacttaactacaaaattgtgatggaatctaatgcattagtactagaatgatcacacctataat |
50626190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 456 - 585
Target Start/End: Original strand, 50631219 - 50631348
Alignment:
| Q |
456 |
taaattcccacttcaatgttggtgtgactcttgccagtttcagttgagatacaatcatgccaatttggactgtatatatagataagtgctatggaatagc |
555 |
Q |
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| T |
50631219 |
taaattcccacttcaatgttggtgtgactcttgccagtttcagttgagatacaatcatgccaatttggactgtatatatagataagtgctatggaatagc |
50631318 |
T |
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| Q |
556 |
tatagacatgtgattcttcctctcactatc |
585 |
Q |
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| T |
50631319 |
tatagacatgtgattcttcatctcactatc |
50631348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 276 - 391
Target Start/End: Original strand, 50630989 - 50631102
Alignment:
| Q |
276 |
ctataatgaaatatgaccattatatgagatatgaatatctgtatttacaattgaagtatgtataatttttaaactcaaaatgaagaaatttttaaataaa |
375 |
Q |
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| T |
50630989 |
ctataatgaaatatgaccattatatgagatatgaatatctgtatttacaattgaagtatg--taatttttaaactcaaaatgaagaaatttttaaataaa |
50631086 |
T |
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| Q |
376 |
atgcacattgttgtgt |
391 |
Q |
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| T |
50631087 |
atgcacattgttgtgt |
50631102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 24620777 - 24620882
Alignment:
| Q |
173 |
acttcgcaggaggtcacccatccaaataata-tactctcgtccaaacacacttaactacgaaattgtgatggaattcgatgcattagtactagtatgatc |
271 |
Q |
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| T |
24620777 |
acttcccaggaggtcacccatccanctagtactactctcgcccaagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatc |
24620876 |
T |
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| Q |
272 |
acacct |
277 |
Q |
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||||| |
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| T |
24620877 |
gcacct |
24620882 |
T |
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