View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_high_6 (Length: 248)
Name: NF6677_high_6
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39895302 - 39895529
Alignment:
| Q |
1 |
tcattcttcatagtgtaccaaaaacctttattaacaaacatgaataggaatggatatagggatgaaaaaccatgttgcaatttccaccctaaacaagtag |
100 |
Q |
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| T |
39895302 |
tcattcttcatagtgtaccaaaaacctttattaacaaacatgaataggaatggatatagggatgaaaaaccatgttgcaatttccaccctaaacaagtag |
39895401 |
T |
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| Q |
101 |
ttgttggtgtatgtcctttatgcttgaatgaaaggcttcttctattggctgcaaaacaaggtcggcgccaccatcataatcaccgttcttcttcatcttc |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39895402 |
ttgttggtgtatgccctttatgcttgaatgaaaggcttcttctattggcagcaaaacaaggtcggcgccaccatcataaccaccgttcttcttcatcttc |
39895501 |
T |
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| Q |
201 |
ttcctccaaaaaagttgctagttcacaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39895502 |
ttcctccaaaaaagttgctagttcacaa |
39895529 |
T |
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