View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_high_7 (Length: 242)
Name: NF6677_high_7
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_high_7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 999958 - 1000205
Alignment:
| Q |
1 |
attagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatactatactaatgttttaattttaataagaccctaa |
100 |
Q |
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| T |
999958 |
attagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatactatactaatgttttaattttaataagaccctaa |
1000057 |
T |
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| Q |
101 |
aatataaaataaccagcaatattgcctaggagttcccattaccaatctcttcc------tcaagctttttgtcttctgcatcttctgcctcctcctctag |
194 |
Q |
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| T |
1000058 |
aatataaaataaccagcaatattgcctaggagttcccattaccaatctctttcctcaagtcaagctttttgtcttctgcatcttctgcctcctcctctag |
1000157 |
T |
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| Q |
195 |
tgaatcctcttcactagtccctttttctttctcaaccttcatctctgc |
242 |
Q |
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| T |
1000158 |
tgaatcctcttcactagtccccttttctttctcaaccttcatctctgc |
1000205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 51315927 - 51316041
Alignment:
| Q |
119 |
atattgcctaggagttcccattaccaatctcttcctcaagctttttgtcttctgcatcttctgcctcctcctctagtgaatcctcttcactagtcccttt |
218 |
Q |
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| T |
51315927 |
atatggcctaggactttccattatcaatctcttcctcaagctccttgtcctcagtatcttctgcctccttctctgatgaatcctctccactagtcccttc |
51316026 |
T |
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| Q |
219 |
ttc-tttctcaacct |
232 |
Q |
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| T |
51316027 |
ttcttttctcaacct |
51316041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 6969261 - 6969139
Alignment:
| Q |
2 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
100 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||||| | |||||||||||||||||||| | | ||||||||| |||||||||||| || |
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| T |
6969261 |
ttagcatattaatctaacttataataaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatg------ttttaataagactct-- |
6969170 |
T |
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| Q |
101 |
aatataaaataaccagcaatattgcctagga |
131 |
Q |
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| T |
6969169 |
aatataaaataactagcaatattgcctagga |
6969139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 6969129 - 6969054
Alignment:
| Q |
167 |
cttctgcatcttctgcctcctcctctagtgaatcctcttcactagtccctttttctttctcaaccttcatctctgc |
242 |
Q |
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||||||||||||||||||||| |||| |||| ||||||||| ||||||| |||||||||| ||||||||||||| |
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| T |
6969129 |
cttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcttctttctcagccttcatctctgc |
6969054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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