View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_low_11 (Length: 231)
Name: NF6677_low_11
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1717483 - 1717696
Alignment:
| Q |
1 |
atttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1717483 |
atttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcattcatcagctctattcctcctaaactttt |
1717582 |
T |
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| Q |
101 |
tctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaacaaagttttaaataaggagagtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1717583 |
tctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcgagtaggtaattcatttggttaacaaagttttaaataaggagagtga |
1717682 |
T |
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| Q |
201 |
atcttagagaaagt |
214 |
Q |
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|||||||||||||| |
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| T |
1717683 |
atcttagagaaagt |
1717696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1738980 - 1739164
Alignment:
| Q |
1 |
atttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttt |
100 |
Q |
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||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
1738980 |
atttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcattcatcagctctattcctcctaaactttt |
1739079 |
T |
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| Q |
101 |
tctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattggttaacaaagtttt |
185 |
Q |
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| T |
1739080 |
tctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcgagtaggtaattcatttggtgaactaagtttt |
1739164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1754151 - 1754300
Alignment:
| Q |
1 |
atttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactttt |
100 |
Q |
| |
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|||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
1754151 |
atttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcattcatcaactctattcctcctaaacttgg |
1754250 |
T |
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| Q |
101 |
tctatgactgtatctgtaaacaagttcaattcatgtat-aaagaaatcag |
149 |
Q |
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||||| || || |||| |||| ||||||||| |||| ||||||||||| |
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| T |
1754251 |
tctattaccatacctgtccacaaattcaattcaagtatcaaagaaatcag |
1754300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1748835 - 1748932
Alignment:
| Q |
1 |
atttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttattcatcagctctattcctcctaaactt |
98 |
Q |
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|||| |||||| ||||||||||| || ||||||| ||||| || ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
1748835 |
attttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcctaaactt |
1748932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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