View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_low_12 (Length: 228)
Name: NF6677_low_12
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 4904132 - 4904001
Alignment:
| Q |
80 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaagccagagaaacacgactacagaacaacca |
179 |
Q |
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| T |
4904132 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaaaccagagaaacacgactacagaacaacca |
4904033 |
T |
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| Q |
180 |
gaaggccaccaaacagccacacagccaaagaa |
211 |
Q |
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| T |
4904032 |
gaaggccaccaaacagccacacagccaaagaa |
4904001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 22153441 - 22153556
Alignment:
| Q |
97 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
195 |
Q |
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| T |
22153441 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22153540 |
T |
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| Q |
196 |
ccacacagccaaagaa |
211 |
Q |
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| T |
22153541 |
ccgcacaaccaaagaa |
22153556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 22209356 - 22209471
Alignment:
| Q |
97 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
195 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
22209356 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22209455 |
T |
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| Q |
196 |
ccacacagccaaagaa |
211 |
Q |
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|| |||| |||||||| |
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| T |
22209456 |
ccgcacaaccaaagaa |
22209471 |
T |
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