View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_low_5 (Length: 501)
Name: NF6677_low_5
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 44265983 - 44265570
Alignment:
| Q |
18 |
ggaccttctacgattcaaaatgtcctaagcttgaatctatcatcagaaaagatcttcaatgatgatgttggtcaagctgctggcttttgtcgccttcact |
117 |
Q |
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| T |
44265983 |
ggaccttctacgattcaaaatgtcctaagcttgaatctatcatcagaaaagatcttcaatgatgatgttggtcaagctgctggctttcgtcgccttcact |
44265884 |
T |
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| Q |
118 |
tccatgcctgctttgtccaggtaaatacatttaatgtatatttagcttaattagttaggatcagcttatactataaacaatactaattaagcattacaat |
217 |
Q |
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| T |
44265883 |
tccatgcctgctttgtccaggtaaatacatttaatgtatatttagcttaattagttaggatcagcttatactataaacaatactaattaagcattacaat |
44265784 |
T |
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| Q |
218 |
gcttgtaattagcatatgtggtgattaaattagcatgaatctgtttagctaactttggaaatccaaacttattatatttggttatttatggattnnnnnn |
317 |
Q |
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| T |
44265783 |
gcttgtaattagcatatgtggtgattaaat---------------tagctaactttggaaatccaaacttattatatttggttatttatggattaaaaaa |
44265699 |
T |
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| Q |
318 |
ntgaaaatgcagggttgtgatggatcagtattattggatggatcagcatgtgagccaagtgagaaagatgcatcaccaaacttgagtcttaggaaagagg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44265698 |
atgaaaatgcagggttgtgatggatcagtattattggatggatcagcaagtgagccaagtgagaaagatgcaccaccaaacttgagtcttaggaaagagg |
44265599 |
T |
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| Q |
418 |
ccttcaagataatcgaaaaacttcgtagt |
446 |
Q |
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| T |
44265598 |
ccttcaagataatcgaaaaacttcgtagt |
44265570 |
T |
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